Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5532
         (670 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical...    32   0.42 
Z36753-5|CAA85334.1|  173|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL110485-27|CAB60369.3|  515|Caenorhabditis elegans Hypothetical
           protein Y46G5A.26a protein.
          Length = 515

 Score = 31.9 bits (69), Expect = 0.42
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
 Frame = +1

Query: 421 LWHK*IIVNNKKSFSDEMPKVIMRYRLIRLRTSSKLYTIRRIM*LKKC-----IYGKKKQ 585
           LWH    V N  S  +   + I    L+RLR +  +   RR+  +  C     ++    Q
Sbjct: 157 LWHPDTFVPNAISSKNPRRQSITHRSLLRLRNNGSILYSRRLSLILTCGMDLTLFPFDTQ 216

Query: 586 FYKMAASGYGA*PDVINFFW 645
             KM    YG   D + + W
Sbjct: 217 LCKMGFESYGYTADKVKYLW 236


>Z36753-5|CAA85334.1|  173|Caenorhabditis elegans Hypothetical
           protein T09A5.6 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +1

Query: 454 KSFSDEMPKVIMRYRLIR 507
           K FS+EMP ++M YR IR
Sbjct: 150 KEFSEEMPDLVMYYRSIR 167


>Z50794-4|CAC35819.1|  396|Caenorhabditis elegans Hypothetical
           protein F59F5.8 protein.
          Length = 396

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 210 TTNLRSYYFKTLQLSANKNLTLFLLVKNTE 121
           TT L  YY   +  +  KN+TL  LV+++E
Sbjct: 59  TTGLIPYYVNVISATVFKNMTLVCLVESSE 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,995
Number of Sequences: 27780
Number of extensions: 214112
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)