Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5530
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   4.8  
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    25   6.3  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   8.3  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -2

Query: 220 INTQTESKQICSSHECLSDVGIEPVTLGTTVKGIN 116
           +   + SK+I SSH  + +   EP T  TT K +N
Sbjct: 461 VEPPSPSKEIKSSHFSVPEFKFEPKTEATTDKKLN 495


>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 121 CPLLLCRGSRVQF--PHQTNIRVMNRFVCSLSGCLLSIC 231
           C + +  G    F  PH TN++ + + + + +G L ++C
Sbjct: 101 CIMFIAGGHAAMFDLPHATNLQTLAQQIYASNGVLAAVC 139


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 534 FNKQRFH-MTATALPRATNYDDDGWGW 457
           FN QR   +T TA  +   Y+ DG GW
Sbjct: 19  FNSQRTEFVTTTATNQVELYEQDGNGW 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,255
Number of Sequences: 5004
Number of extensions: 39153
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)