Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5529
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 300 1e-82
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 176 2e-45
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 169 2e-43
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 130 2e-31
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit... 28 1.3
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 27 2.9
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 27 2.9
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 5.1
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 8.8
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 300 bits (736), Expect = 1e-82
Identities = 142/205 (69%), Positives = 162/205 (79%)
Frame = +3
Query: 3 AELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSV 182
AEL D+VLDVVR+EAE+CD LQGFQ KIREEYPDR+M T+SV
Sbjct: 110 AELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSV 169
Query: 183 VPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLV 362
P+PK SDTVVEPYNATLS+HQLVEN+DET+CIDNEAL I TLK+ +P+Y DLNHLV
Sbjct: 170 APAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLV 229
Query: 363 SLTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPEL 542
S M+GVTT RFPG+LN+DLRKLAVNMVPFPRLHFFM GFAPL + GS ++A++VPEL
Sbjct: 230 SAVMAGVTTSFRFPGELNSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPEL 289
Query: 543 TQQMFDAKNMMAACDPRHGRYLTVA 617
TQQMFDA NMM A DPRHGRYLTVA
Sbjct: 290 TQQMFDANNMMVAADPRHGRYLTVA 314
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 176 bits (428), Expect = 2e-45
Identities = 80/201 (39%), Positives = 121/201 (60%)
Frame = +3
Query: 6 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVV 185
E++DSVL+ +R+ A++C LQGF ++ EY + +SV
Sbjct: 117 EMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVY 176
Query: 186 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 365
P+P+VS +VVEPYN+ L+ H ++N+D T+ +DNEA YDIC R L + PTY +LN L++
Sbjct: 177 PAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIA 236
Query: 366 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 545
+S +T LRF G LN DL + N+VP+PR+HF + ++P+ S + + +V E+T
Sbjct: 237 QVVSSITASLRFAGSLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEIT 296
Query: 546 QQMFDAKNMMAACDPRHGRYL 608
Q F+ N M CDPR GRY+
Sbjct: 297 NQCFEPYNQMVKCDPRTGRYM 317
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 169 bits (412), Expect = 2e-43
Identities = 79/201 (39%), Positives = 117/201 (58%)
Frame = +3
Query: 6 ELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVV 185
ELVD V D +R+ A++C LQGF ++ EY + +SV
Sbjct: 113 ELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVY 172
Query: 186 PSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 365
P+P+VS +VVEPYN+ L+ H ++ D T+ +DNE+ YDIC R L + P+Y +LN L++
Sbjct: 173 PAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIA 232
Query: 366 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELT 545
+S +T LRF G LN DL + N+VP+PR+HF + +AP+ S + + +V E+T
Sbjct: 233 QVVSSITASLRFEGSLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEIT 292
Query: 546 QQMFDAKNMMAACDPRHGRYL 608
Q F+ N M CDPR GRY+
Sbjct: 293 NQCFEPYNQMVKCDPRAGRYM 313
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 130 bits (314), Expect = 2e-31
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 4/198 (2%)
Frame = +3
Query: 9 LVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVP 188
+ + ++D++ +EA+ D L+GF ++ + YP +I+ TYSV P
Sbjct: 114 IFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFP 173
Query: 189 -SPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 365
S VSD VV+PYN+ L++ +L N D +DN AL I L PT+ N LVS
Sbjct: 174 NSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVS 233
Query: 366 LTMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVP 536
MS TT LR+PG +N DL + +++P PR HF + + P T++ ++ +A+ TV
Sbjct: 234 TVMSASTTTLRYPGYMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVL 293
Query: 537 ELTQQMFDAKNMMAACDP 590
++ +++ KN M + +P
Sbjct: 294 DVMRRLLLPKNQMVSVNP 311
>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
Rep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 472
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = -1
Query: 544 VSSGTVSARYCWLPRDVSGAKPGMKKCRRGKGTMLTASLRRSAFSCPGNRRHVVTPDMV 368
++ G + R C + A+ K+ +GK T++ + + P RRH+ D+V
Sbjct: 350 IAYGGIPMRVCHSDSTLCDARIAAKQALKGKRQYDTSTSKAELSTPPSKRRHIDDADLV 408
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +3
Query: 246 QLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNADL 425
Q+ NTD + N LY RT+ DLN SL + GV +F G + +
Sbjct: 301 QVCTNTDSSRNAGNAILYQ-AVRTIL-------DLNSDSSLRVLGVNILAKFLGNRDNNT 352
Query: 426 RKLAVNMV 449
R +A+NM+
Sbjct: 353 RYVALNML 360
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.6 bits (56), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 433 SLRRSAFSCPGNRRHVVTPDMVSDTRWFRSPYVGVDSFSVRKQI 302
+LR NR ++ P ++ R R YVG +F RKQI
Sbjct: 679 ALRNVLVLAATNRPDMIDPALMRPGRLDRLLYVGPPNFEARKQI 722
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = -1
Query: 601 RPWRGSQAAIMFLASNICCVSSGTVS-ARYCWLPRDVSGAKPGMKK 467
+P SQ A + S + C+ S Y ++PR G+KP K+
Sbjct: 550 KPTGASQWAAVACTSVVSCIIMAAASLCEYLFVPRRFPGSKPIWKR 595
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 261 TDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVS 365
T Y + E YDIC L T LNHL+S
Sbjct: 256 TSFLYALAGELDYDICVLNLAEKGLTDDRLNHLLS 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,117
Number of Sequences: 5004
Number of extensions: 40256
Number of successful extensions: 154
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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