Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5529
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.79 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.7  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   9.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.7  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.79
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 12  VDSVLDVVRKEAESCDCLQG 71
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 326 IHTHIRRPEPPGVADHVRRDDVPAVPR-TAERRP 424
           ++ H R P+   +A  V+R  +  +PR    RRP
Sbjct: 329 LNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +2

Query: 326 IHTHIRRPEPPGVADHVRRDDVPAVPR-TAERRP 424
           ++ H R P+   +A  V+R  +  +PR    RRP
Sbjct: 329 LNVHFRSPQTHKMAPWVKRVFIHILPRLLVMRRP 362


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 326 IHTHIRRPEPPGVADHVRRDDVPAVPR 406
           ++ H R P+   +A  VRR  +  +PR
Sbjct: 325 LNVHFRSPQTHVMAPWVRRVFIHVLPR 351


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 14/53 (26%), Positives = 18/53 (33%)
 Frame = +2

Query: 203 GHSSRTVQRHTFSSSIS*KHRRNLLYRQRGSLRYLLPHAKTIHTHIRRPEPPG 361
           GHS      H   S  +  H ++       S    +    T H H   PE PG
Sbjct: 422 GHSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHHPHPPETPG 474


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 138 IREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVEN 260
           +R      I + + ++ +PKVS+       ATLS  +++ N
Sbjct: 538 VRTPTDSYIRSFFELLQNPKVSNEQFLNTAATLSFCEMIHN 578


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 477 PGFAPLTSRGSQQYRALTVPELTQQ 551
           PG  P   + +QQ++ +    L+QQ
Sbjct: 219 PGMHPRQQQQAQQHQGVVTSPLSQQ 243


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 68  GIPTDTLARRRHRFRYGHP 124
           GIP+ TL +R HR     P
Sbjct: 438 GIPSTTLWQRAHRLGIDTP 456


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,188
Number of Sequences: 438
Number of extensions: 2903
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)