Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5528
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    28   1.2  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    28   1.6  
SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyce...    26   4.8  

>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +3

Query: 531 TLASYFIRVLLHHHFDNSTETVSWRDPFVP 620
           T+ASY I VL   H DNS    + RDP  P
Sbjct: 138 TIASYGIVVLAMEHRDNSAIISTVRDPLHP 167


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 386 PHPSNQNALLLHGRNRQSTDSQEVLPPVITQI 291
           PHP N   +LL G N Q+  S  + P + T I
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSPLNPYIRTII 128


>SPAC23A1.14c |||cystathionine gamma-synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 398

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 265 NKTQTRKIIICVITGGRTSCESVL 336
           N  QT++ +   +TGG  SC SVL
Sbjct: 306 NSLQTKEFVAKNLTGGHASCFSVL 329


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,039,148
Number of Sequences: 5004
Number of extensions: 63228
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)