Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5528
         (729 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0194 + 1503350-1503554,1504399-1504490,1504835-1504935,150...    28   6.6  

>06_01_0194 +
           1503350-1503554,1504399-1504490,1504835-1504935,
           1506186-1506276,1506616-1506674,1506764-1506884,
           1506959-1507027,1507321-1507373,1507688-1507796,
           1507895-1508065,1508148-1508306,1508561-1508650,
           1508751-1508933,1509837-1510027,1510340-1510787
          Length = 713

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 194 LVPAWDSNTGASLNTNEPDG 135
           +V  WD NTG ++ + EPDG
Sbjct: 292 IVRVWDPNTGNNMTSIEPDG 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,849,710
Number of Sequences: 37544
Number of extensions: 414965
Number of successful extensions: 675
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)