Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5528
         (729 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.32 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    26   0.42 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -3

Query: 178 IRTPAHRSTRMNRTAYPLGHDDFNHCFTAEINRKSVHSNYELDRSGAEVSR 26
           ++ P   + +   TA  L   +  H   A++N++S+H+NY +   G   S+
Sbjct: 553 LQNPKVSNEQFLNTAATLSFCEMIH--NAQVNKRSIHNNYPVHTFGRLTSK 601


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 616 TKGSLQETVSVELSKWWCN 560
           T+G LQ     E++KWW N
Sbjct: 351 TRGFLQPVCQNEMNKWWWN 369


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 262 CNKTQTRKIIICVITGGRTSCESV 333
           CNKT  RK+I  V+ G  +S  S+
Sbjct: 203 CNKTAVRKVISGVV-GAASSVTSI 225



 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 280 GFEFYYTMLFVHRESQS*TFVEY-VFH*KNWYPPGIRTPAHRS 155
           GFE Y+  L V    ++  FVE+   H +  YP    TP +++
Sbjct: 407 GFEEYFLNLTVENNRRNPWFVEFWEHHFQCRYPNASVTPYNKN 449


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -2

Query: 377 SNQNALLLHGRNRQST 330
           + +NA+LL GR+++ST
Sbjct: 366 TKENAMLLSGRSQKST 381


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 115 DFNHCFTAEINRKSVHS 65
           DF  C    +N K VHS
Sbjct: 117 DFQECTFISVNGKEVHS 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,023
Number of Sequences: 438
Number of extensions: 4908
Number of successful extensions: 25
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)