Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5527
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   237   9e-64
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.5  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.2  
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    25   8.2  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  237 bits (581), Expect = 9e-64
 Identities = 103/140 (73%), Positives = 128/140 (91%)
 Frame = +3

Query: 135 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIIDFFLGPSLNDEVLKIMPVQ 314
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++I+D+FL P LNDEV+K++PVQ
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQ 86

Query: 315 KQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNK 494
           KQTRAGQRTRFKAFV IGD++GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  
Sbjct: 87  KQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTA 146

Query: 495 IGKPHTVPCKVTGKCGSVTV 554
           +G PHTVP KV+GKCGSVTV
Sbjct: 147 LGDPHTVPVKVSGKCGSVTV 166



 Score = 68.9 bits (161), Expect = 7e-13
 Identities = 28/44 (63%), Positives = 37/44 (84%)
 Frame = +1

Query: 556 RLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSACGSTGTLGKFL 687
           RL+PAPRG G+V+APV K+ LQ+AG++DCYT + GST TLG F+
Sbjct: 167 RLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFV 210


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 132 RAHDHGRDHDRVHEDRRGLYLHRVIRIRRENRHVHRLEQRPP 7
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 608 KSFFRWLVYRTATPQLVVQL 667
           +S F+WL+  TATP+L+V L
Sbjct: 69  RSVFQWLIALTATPRLLVLL 88


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/71 (26%), Positives = 32/71 (45%)
 Frame = -1

Query: 638 SCTPAI*RSFLGTGADTIPVPRGAGISRDCYRTTLAGDLARDGVWLSDLVTPVTSSNW*N 459
           S  P+   S+  +   T  +   A I    YR   +        ++S++VTP T++NW N
Sbjct: 148 SSVPSSSSSYHSSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYVSEVVTPTTTNNW-N 206

Query: 458 RQLSKDNSASN 426
              S  +S S+
Sbjct: 207 SSSSFTSSTSS 217


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 461 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 327
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 138 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFEIID 260
           +D+ EW P++    LV   ++   E  +++    K++E+ID
Sbjct: 241 KDKPEWQPISLKSELVPNEELLGEEYSHIYHTISKKYELID 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,510
Number of Sequences: 5004
Number of extensions: 65640
Number of successful extensions: 181
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)