Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5526
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    29   0.85 
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    28   1.1  
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr...    28   1.5  
SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding pro...    28   1.5  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.0  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.0  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    27   2.6  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.4  
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    27   3.4  
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc...    26   6.0  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   6.0  
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    26   6.0  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   6.0  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   7.9  

>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +1

Query: 223 DGKWHPYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGP----YAHDYEPYVGEAT 390
           +GK H  + GDSG  I  +   +   P   +  + PY     P     A +  P +G+AT
Sbjct: 139 NGKLHSLNLGDSGFLILRNGAIHYASPAQVLQFNMPYQLAIYPRNYRSAENIGPKMGQAT 198

Query: 391 VQD 399
           V D
Sbjct: 199 VHD 201


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 625 CTRRSLWRLYLRQW--S*RFSKPPSL 554
           C RRS++ LY+ +W  +  F+KPPSL
Sbjct: 284 CIRRSVFCLYILEWFLALIFNKPPSL 309


>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 501

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 511 KYDFDFETENKIRAEEKAVLKNANSIDEG 597
           KY F+ ETEN+++ ++  +L     IDEG
Sbjct: 429 KYSFEPETENELKLKKGDLLLVLKEIDEG 457


>SPAC2F3.04c |rim1||mitochondrial single-stranded DNA binding
           protein Rim1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 20/78 (25%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = +1

Query: 463 NNGIKIIKQKHN-YDEDKYDFD-----FETENKIRAEEKAVLKNANSIDEGIASKGFYEY 624
           NNG  +    H+ Y  D Y+FD          ++  E  AV ++  + +EG  +K    +
Sbjct: 57  NNGKDVAPTFHSVYVFDSYNFDRLQTILRKGTRVYVEADAVWRSVPAGNEGSQAKMSLRH 116

Query: 625 IGPDGFMYRVDYTADENG 678
           +  D   Y  +   DE+G
Sbjct: 117 VSADVLFYPRNKNGDESG 134


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 238 PYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFG 348
           P    D G++   D+  Y+ IP+P++ +   Y GG G
Sbjct: 264 PNRVDDHGRFHFKDDS-YLPIPHPFLGVPKVYRGGSG 299


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 412 ILTPPKDIPFYKDGYYKNNGIKIIKQKHNYDE----DKYDFDFETENKIRAEEKAVLKNA 579
           +L+P +  P    G Y +NG+   +++   D+    D++++ + T      +E  +L   
Sbjct: 278 VLSPREQTPALFTGQYPDNGVYYEEEEEEEDDNDLFDEHEYGYGTLPPFVFDEDQMLDGG 337

Query: 580 NSIDE 594
            S DE
Sbjct: 338 ESTDE 342


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 259 GKYIPTDEGKYIHIPNPYIHIDNPYDGGFGPY 354
           G  +PT  G Y+  PN Y  +  PY+  + PY
Sbjct: 710 GSSMPTANGFYV--PNTYSPVPFPYNTSYPPY 739


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 581 TPLTKV*PPKASTSTSVLTASCTEWTTPP 667
           TP+T   PP  S+ST + T +CT  T+ P
Sbjct: 407 TPVTPTVPP-TSSSTPLTTTNCTTSTSVP 434


>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 577 ANSIDEGIASKGFYEYIGPDGFMYRVDYTADENGFRPKVKRL 702
           A+  D G        +  PDG    +++  D+NG + KV R+
Sbjct: 10  ADDEDYGTGLPSIQTFDNPDGTKTMIEFRIDDNGKKVKVTRV 51


>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +1

Query: 430 DIPFYKDGYYKNNGIKIIKQKHNYDEDKYDFD-FETENKIRAEE 558
           D PF+KD     N  K  K KH   ED       E EN +R +E
Sbjct: 513 DDPFFKDKDASRNNKKNKKGKHTQIEDPTAASKEELENLVREDE 556


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 490 KHNYDEDKYDFDFETENKIRAEE 558
           +H YD D  +F+FE +N +   E
Sbjct: 73  EHTYDIDNKNFNFEPKNSVNKTE 95


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 41  TSFRIVISRLAVLTSAPDNCNKE 109
           T FR+ IS     +S PD CN E
Sbjct: 355 TDFRVSISYFPSSSSIPDECNTE 377


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 232 IFHPQQVHPPRLRCIAQSHTAP*TNSS 152
           +FHP++V   +L  + Q   +P TN+S
Sbjct: 425 LFHPEEVQQQQLEQMQQQQFSPETNAS 451


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 454 YYKNNGIKIIKQKHNYDEDKY---DFDFETENKIRAEEKAVLK 573
           Y K  G +  KQ +  DE      DFDF+T + + AEE  +LK
Sbjct: 566 YIKRQGTQN-KQLNCRDESTVIPSDFDFDTLHSVSAEELMLLK 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,704
Number of Sequences: 5004
Number of extensions: 64678
Number of successful extensions: 198
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)