Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5526
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378...    31   0.67 
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70...    29   3.6  
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70...    29   3.6  
07_01_0249 - 1844894-1845363,1845557-1848158                           29   4.7  
02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950           29   4.7  
09_04_0569 + 18600750-18602117                                         28   8.3  

>03_04_0013 +
           16436438-16436536,16437257-16437742,16437791-16437826,
           16437835-16438323,16438951-16439622
          Length = 593

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 385 ATVQDQYRLILTPPKDIPFYKDG-YYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEK 561
           A + ++Y+++  P   I   K G  Y  +G++++   H Y  + Y F  E  N+++ +EK
Sbjct: 112 AKLNERYKVMGIPHLVILDAKSGEIYTEDGVELV---HEYGTEAYPFTTERINELKEQEK 168

Query: 562 AVLKN 576
           A   N
Sbjct: 169 AAKDN 173


>01_01_0090 +
           706340-707296,707370-707513,707596-707682,707771-708105,
           708462-708702,708783-708857,708932-709017,709451-709523,
           709637-709961,710092-711750,711938-713322
          Length = 1788

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +1

Query: 454 YYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEKAVLKNANSIDE 594
           Y  ++ IKI+KQ H+   + Y+   +T++++ ++ ++++     +DE
Sbjct: 468 YLHSDAIKIVKQNHSSIVEMYEKIMKTQSQMPSKMESLVDRYKDLDE 514


>01_01_0089 -
           699533-699643,699738-700046,700134-700220,700298-700469,
           700547-701373,701487-701559,701993-702078,702153-702227,
           702308-702548,702905-703239,703328-703414,703497-703640,
           703714-704670
          Length = 1167

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/47 (23%), Positives = 29/47 (61%)
 Frame = +1

Query: 454 YYKNNGIKIIKQKHNYDEDKYDFDFETENKIRAEEKAVLKNANSIDE 594
           Y  ++ IKI+KQ H+   + Y+   +T++++ ++ ++++     +DE
Sbjct: 468 YLHSDAIKIVKQNHSSIVEMYEKIMKTQSQMPSKMESLVDRYKDLDE 514


>07_01_0249 - 1844894-1845363,1845557-1848158
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 208 GVPVEDGKWHPYHY----GD--SGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGP 351
           G+P E G+W    Y    G+  SGK IP + G    +   YI   N Y GG  P
Sbjct: 181 GIPPEYGRWGRLQYLAVSGNELSGK-IPPELGNLTSLRELYIGYFNSYSGGIPP 233


>02_01_0352 - 2542088-2542985,2543523-2543563,2543798-2543950
          Length = 363

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = +1

Query: 10  SVHTGGVVTVNEFPHSDLASCSAYQCPGQL*QGNCCCWNRNYKQSALRMNSFKVQYVIAL 189
           S H    + + EF   DL     YQ P    +    C  RN     +RMN  +   +   
Sbjct: 122 SSHHSANLELTEFSLKDLKIFCNYQTPEFKPRFKLVCGTRNATCEGMRMNYIQAGQIFKE 181

Query: 190 CIVAAVGVP 216
            + A++G P
Sbjct: 182 IVNASLGTP 190


>09_04_0569 + 18600750-18602117
          Length = 455

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 533 LKTRSVLKRRRF*KTLTP--LTKV*PPKA-STSTSVLTASCTEWTTPPTKTDSVLRS 694
           LK  +VL R     TLT   L+++ PP + S STS  ++SC+  ++PP +     RS
Sbjct: 154 LKPENVLLRADGHVTLTDFDLSRLLPPVSPSASTSTSSSSCSATSSPPPQLQGHGRS 210


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,162,496
Number of Sequences: 37544
Number of extensions: 447864
Number of successful extensions: 1104
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)