Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5526
         (702 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-1...    31   5.3  
AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.    31   5.3  

>AF144094-1|AAF05903.1| 3530|Homo sapiens unconventional myosin-15
           protein.
          Length = 3530

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = +1

Query: 208 GVPVEDGKWHPYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGPYAHDYEPYVGEA 387
           G P + G  + Y Y D         G      +PY + D  Y+G   PY +  +PY    
Sbjct: 296 GGPFDPGYTYGYGYDDYEPPYAPPSG----YSSPYSYHDG-YEGEAHPYGYYLDPYAPYD 350

Query: 388 TVQDQYRLILTPPKDIPFY 444
                Y L    P D+P++
Sbjct: 351 APYPPYDLPYHTPYDVPYF 369


>AB209423-1|BAD92660.1| 1103|Homo sapiens myosin XV variant protein.
          Length = 1103

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 21/79 (26%), Positives = 31/79 (39%)
 Frame = +1

Query: 208 GVPVEDGKWHPYHYGDSGKYIPTDEGKYIHIPNPYIHIDNPYDGGFGPYAHDYEPYVGEA 387
           G P + G  + Y Y D         G      +PY + D  Y+G   PY +  +PY    
Sbjct: 173 GGPFDPGYTYGYGYDDYEPPYAPPSG----YSSPYSYHDG-YEGEAHPYGYYLDPYAPYD 227

Query: 388 TVQDQYRLILTPPKDIPFY 444
                Y L    P D+P++
Sbjct: 228 APYPPYDLPYHTPYDVPYF 246


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,178,141
Number of Sequences: 237096
Number of extensions: 2361018
Number of successful extensions: 9322
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9311
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)