Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5526
         (702 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    42   4e-06
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   3.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.5  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   6.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   6.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 42.3 bits (95), Expect = 4e-06
 Identities = 23/63 (36%), Positives = 34/63 (53%)
 Frame = +1

Query: 496 NYDEDKYDFDFETENKIRAEEKAVLKNANSIDEGIASKGFYEYIGPDGFMYRVDYTADEN 675
           N+D + Y  +FET N I  +E    K  ++ +  + S+G   Y  PDG    + Y ADEN
Sbjct: 37  NFDGN-YINNFETSNGISHQESGQPKQVDN-ETPVVSQGSDSYTAPDGQQVSITYVADEN 94

Query: 676 GFR 684
           GF+
Sbjct: 95  GFQ 97


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 575 TLTPLTKV*PPKASTSTSVLTASCTE---WTTPPTKTDSV 685
           T+T +T       +T+T+  T + T+    TTPP + D V
Sbjct: 657 TITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEV 696


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 353 MHTTMNPMLARLQFKINT 406
           + +T+ P LAR QF+ NT
Sbjct: 336 LKSTLTPKLARKQFQKNT 353


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 442 YKDGYYKNNGIKIIKQKHNYDE 507
           Y + YY NN  K +    NY E
Sbjct: 313 YSNNYYNNNNYKKLYYNINYIE 334


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 53  IVISRLAVLTSAPDNCNKE 109
           I+I  + +L  A D CNK+
Sbjct: 548 IIIMTVLILRRASDECNKK 566


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 523 DFETENKIRAEEKAVLKNANSIDEGIASKGFY---EYIGPDG 639
           D+E E  I  + K +++  N ID   A + FY   EY+  +G
Sbjct: 383 DWENEMNIITKGKPLIRVENIIDLEGAPQNFYYIEEYLPGNG 424


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 162 VQGAVCDCAMHRSRG 206
           V+G + DC+ H  RG
Sbjct: 320 VEGVIIDCSNHIGRG 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,007
Number of Sequences: 438
Number of extensions: 5361
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)