Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5523
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi...    28   0.50 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.2  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    27   1.5  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    26   2.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   4.7  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    25   4.7  
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    25   6.1  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   6.1  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    24   8.1  
SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   8.1  
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    24   8.1  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    24   8.1  

>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
           Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 243 PKRQRVYSERASYQN*TFHYMPSWGAGILRT 151
           P  +R   ER SY+  T H M SW + ++R+
Sbjct: 503 PLERRKMIERESYKQVTTHTMQSWTSSLIRS 533


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 20/56 (35%), Positives = 25/56 (44%)
 Frame = +3

Query: 156 EEFQHPTKAYSGKSSFDMKLSQNRHVAALVRKAVHGICNIFLRLHILKACIRSLSG 323
           EEFQH    Y GK+  D     N H+       VH I  I  +L  L+  +R L G
Sbjct: 796 EEFQHALMRYLGKTDDD---EDNSHL------LVHHIPTIIRKLEQLEQIVRFLKG 842


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 77  LWDVCHLPFLSP 112
           LWD CH P LSP
Sbjct: 128 LWDACHFPPLSP 139


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 153 SEEFQHPTKAYSGKSSFDMKLSQNRHVAALVRKAVHGICNIFLRLHILKACIRSLSG 323
           + +  HP K +     F  + S  RHVA  VR A+    N + R+ ++ A  R  +G
Sbjct: 152 AHQLLHPNKQFPAIRPFPNEKSLVRHVARQVRLALKKNNNQYPRILVIGALGRCGTG 208


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 156  RTYCS*RGSQSRTADGDRKGRWQTSQRTQSHE 61
            R+  S RG+ SR ADG R   + +++R +S +
Sbjct: 1543 RSNGSNRGNDSRDADGRRSTHYASNKRPRSSD 1574


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 17  CGS*CLEKIVFSPTISWDCVLWDV 88
           C S C ++ + + +  W C+LWD+
Sbjct: 73  CWSSC-DRFLLTASRDWKCILWDL 95


>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 145 AICPKNSSTPRRHIVESLVL 204
           ++CPKNSS  R  ++  LVL
Sbjct: 730 SLCPKNSSIIRHALLAKLVL 749


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 90  QTSQRTQSHEMVGLNTIFSKHQLP 19
           QT  ++ S E  G+N+I + H+LP
Sbjct: 790 QTQTKSTSKERNGINSIKTYHELP 813


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 128 NLEQLMVTEKVDGKRPRGRSPTRWSD 51
           NL+ ++  +K+D  R    SPTR +D
Sbjct: 478 NLDSILDLKKIDSVRTSIESPTRTAD 503


>SPAC959.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +3

Query: 126 IVTLFTSNMSEEFQHPTKAYSGKSSFDMKLSQNRHVAALVRKAVHGICNIFL 281
           I TLF   ++    HP     G  S+  ++S ++ +   + K +  +  +FL
Sbjct: 83  IFTLFVKYITS-LNHPEYLLLGGYSYGARISMHKSITLAIDKRISHVSYLFL 133


>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 167 LEFFGHIARKEGHNLEQLMVTEKVDGKRP 81
           + +FG  A      L+QLM+ + ++G  P
Sbjct: 64  ITYFGEDALARRQRLQQLMIEKSLEGDNP 92


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 287 QPQKNVTDSMDSLSHQSGNVSI 222
           QP  ++TD++DSL  +S +V +
Sbjct: 12  QPTASLTDAIDSLDKRSDSVEV 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,447
Number of Sequences: 5004
Number of extensions: 39640
Number of successful extensions: 112
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)