Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5523
(413 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0600 - 30273080-30274692,30274709-30274949 32 0.21
11_05_0086 + 18964493-18965737,18965896-18966360 29 1.5
11_05_0089 + 18975637-18977439 28 2.6
10_08_0556 - 18739091-18739399,18740126-18740325,18740453-187405... 28 3.4
09_02_0437 - 9399982-9401253 28 3.4
02_05_0099 - 25816029-25816337,25816825-25817027,25817108-258171... 28 3.4
12_01_0395 - 3117315-3118117,3118354-3118478,3118558-3118770,311... 27 4.5
06_03_0305 + 19388745-19388963,19389069-19389209,19389799-193898... 27 4.5
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 27 5.9
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 27 5.9
03_05_0844 + 28139996-28140736 27 5.9
04_04_1576 - 34551095-34552645 27 7.8
>02_05_0600 - 30273080-30274692,30274709-30274949
Length = 617
Score = 31.9 bits (69), Expect = 0.21
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -3
Query: 297 LKYAAAEKCYRFHGQPFAPKRQRVY 223
L +AAA+ C+R HG PF P VY
Sbjct: 14 LAFAAADWCFRLHGWPFMPPLLGVY 38
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -3
Query: 297 LKYAAAEKCYRFHGQPFAPKRQRVY 223
L +AAA+ C+R HG P P VY
Sbjct: 571 LAFAAADWCFRLHGWPVMPPLLGVY 595
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 306 YTPLKYAAAEKCYRFHGQPFAPKRQRVY 223
+ P AA+ C+R HG P P VY
Sbjct: 538 HRPAASTAADWCFRLHGWPIMPPLLGVY 565
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.1 bits (62), Expect = 1.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 290 YFKGVYSVSVGLFQCAGLRSLS 355
Y V++V GLF CA LRSLS
Sbjct: 270 YTPAVHAVPSGLFSCAALRSLS 291
>11_05_0089 + 18975637-18977439
Length = 600
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = +2
Query: 305 YSVSVGLFQCAGLRSLS 355
YSV GLF CA LRSLS
Sbjct: 235 YSVPRGLFACAALRSLS 251
>10_08_0556 -
18739091-18739399,18740126-18740325,18740453-18740501,
18741151-18741285
Length = 230
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 245 HQSGNVSILRELHIKTRLSTICLRGVLEFFGHI 147
H ++ L LH L TICL GV FG +
Sbjct: 102 HNESGIANLYSLHSWVGLGTICLYGVQWIFGFV 134
>09_02_0437 - 9399982-9401253
Length = 423
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 92 HLPFLSPSAVLDCDPLYEQYVRRIPAPHEG 181
H PF P V+ C+PL ++ R +P+P G
Sbjct: 133 HAPFCFPEVVV-CEPLTRRHRRILPSPDFG 161
>02_05_0099 -
25816029-25816337,25816825-25817027,25817108-25817156,
25818274-25818417
Length = 234
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 245 HQSGNVSILRELHIKTRLSTICLRGVLEFFGHIA 144
H ++ L LH + TICL G+ FG +A
Sbjct: 106 HNESGIANLYSLHSWLGIGTICLYGIQWIFGFVA 139
>12_01_0395 -
3117315-3118117,3118354-3118478,3118558-3118770,
3118850-3120076,3120537-3120622,3121197-3121223
Length = 826
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 29 CLEKIVFSPTISWDCVLWDVCH 94
CL+K+ F T+ W C D CH
Sbjct: 40 CLDKVDFDGTVDWSC---DECH 58
>06_03_0305 +
19388745-19388963,19389069-19389209,19389799-19389836,
19390161-19390227,19392057-19392467
Length = 291
Score = 27.5 bits (58), Expect = 4.5
Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -3
Query: 381 PFP*FSPYSDKERRPAH*KSPTE-TEYTPLKYAAAEKCYR 265
PFP S + R A S TE TE+T LK A E+C R
Sbjct: 222 PFPIHSSGTKSSRLNALQSSETEVTEFTQLKEAYTEECDR 261
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/35 (25%), Positives = 18/35 (51%)
Frame = +2
Query: 284 AAYFKGVYSVSVGLFQCAGLRSLSEYGENYGKGPI 388
A Y G++ G+F+ G + + + YG+ P+
Sbjct: 761 AIYLTGLHQTVGGIFRAVGYTLMGQLADEYGRKPL 795
>09_04_0573 +
18636083-18636237,18637842-18638365,18638420-18638529,
18638639-18638677,18638724-18638764,18638862-18638960,
18639405-18639576
Length = 379
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +2
Query: 329 QCAGLRSLSEYGENYGK-GPIRV*F 400
+ GL +++EYG+ YGK PI+V F
Sbjct: 334 EAGGLIAIAEYGQEYGKEDPIQVLF 358
>03_05_0844 + 28139996-28140736
Length = 246
Score = 27.1 bits (57), Expect = 5.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 162 ILRTYCS*RGSQSRTADGDRKGRWQTSQRT 73
+LR +CS + R G + GRWQ + T
Sbjct: 94 LLRPFCSTTALRQRGDSGGQGGRWQVTSTT 123
>04_04_1576 - 34551095-34552645
Length = 516
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3
Query: 204 DMKLSQNRHVAALVRKAVHGICNIFLRLHILKACIRS 314
D +L+ + H A L R + +IFL H+L AC +S
Sbjct: 52 DPRLAVSLHAALLKRGFLLASSHIFLCNHLLIACFKS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,631,746
Number of Sequences: 37544
Number of extensions: 273555
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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