Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5523
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    36   0.015
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    36   0.015
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    36   0.015
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    36   0.015
AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    32   0.19 
U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical pr...    30   0.76 
U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AL032632-11|CAJ80824.1|  462|Caenorhabditis elegans Hypothetical...    27   5.4  
AL032632-10|CAA21581.1|  475|Caenorhabditis elegans Hypothetical...    27   5.4  
Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine re...    27   7.1  
Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical p...    26   9.4  
Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical pr...    26   9.4  
U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm rec...    26   9.4  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 167 LEFFGHIARKEGHNLEQLMVTEKVDG-KRPRGRSPTRWSD*IRSSL 33
           L + GH+AR++      LM   +  G KRP GR P RW+D +R  +
Sbjct: 812 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEI 857


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 167  LEFFGHIARKEGHNLEQLMVTEKVDG-KRPRGRSPTRWSD*IRSSL 33
            L + GH+AR++      LM   +  G KRP GR P RW+D +R  +
Sbjct: 987  LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEI 1032


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 167 LEFFGHIARKEGHNLEQLMVTEKVDG-KRPRGRSPTRWSD*IRSSL 33
           L + GH+AR++      LM   +  G KRP GR P RW+D +R  +
Sbjct: 726 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEI 771


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 35.5 bits (78), Expect = 0.015
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 167 LEFFGHIARKEGHNLEQLMVTEKVDG-KRPRGRSPTRWSD*IRSSL 33
           L + GH+AR++      LM   +  G KRP GR P RW+D +R  +
Sbjct: 338 LGWAGHVARRKDGRWTTLMTEWRPYGWKRPVGRPPMRWTDSLRKEI 383


>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 31.9 bits (69), Expect = 0.19
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 167 LEFFGHIARKEGHNLEQLMVTE-KVDGKRPRGRSPTRWSD*IRSSL 33
           L + GH+AR+       LM      D KRP GR P RW+D +R  +
Sbjct: 123 LGWAGHVARRTDGRWTTLMNDWCPRDEKRPVGRPPMRWNDSLRKEV 168


>U80446-6|AAB37805.2|  783|Caenorhabditis elegans Hypothetical
           protein F56A3.1 protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 0.76
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = -1

Query: 362 HIQIRSADLHTEKARQRPNTRL*NMQPQKNVTDSMDSLSHQSGNVSILRELHIKTRLSTI 183
           HI++ S + HTE  ++  N      Q +K V   ++ L H + N SI  E   +T+L   
Sbjct: 656 HIEMTSKE-HTELFKRLQNPDFSRFQRRKRVFWVLEDLEHPNENKSIPIEEMDETQL--- 711

Query: 182 CLRGVLEFFGHI-ARKEGHNLEQLMVTEKVD 93
           C    +++ G I + K    L + M  E V+
Sbjct: 712 CWNQDIQYLGEIKSSKLSERLTRYMKDEPVE 742


>U41110-1|AAA82415.1|  506|Caenorhabditis elegans Hypothetical
           protein ZK682.2 protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 326 FQCAGLRSLSEYGENYGKGPIRV 394
           FQC G  SL ++   + K PI V
Sbjct: 463 FQCCGTASLQDWDSTHSKAPIEV 485


>AL032632-11|CAJ80824.1|  462|Caenorhabditis elegans Hypothetical
           protein Y11D7A.3b protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 275 FSAAAYFKGVYSVSVGLFQCAG---LRSLSEYGENYG 376
           F    Y  G+YSVS+GL +  G   LR L +   +YG
Sbjct: 277 FKTDIYIIGIYSVSMGLAEAIGGIFLRPLLKRAGDYG 313


>AL032632-10|CAA21581.1|  475|Caenorhabditis elegans Hypothetical
           protein Y11D7A.3a protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 275 FSAAAYFKGVYSVSVGLFQCAG---LRSLSEYGENYG 376
           F    Y  G+YSVS+GL +  G   LR L +   +YG
Sbjct: 290 FKTDIYIIGIYSVSMGLAEAIGGIFLRPLLKRAGDYG 326


>Z46828-1|CAA86856.1|  542|Caenorhabditis elegans Hypothetical
           protein R03D7.2 protein.
          Length = 542

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 107 TEKVDGKRPRGRSPTRWSD*IRSSLNINFHNALH 6
           + K+DG  PR RSP R       S + N  ++LH
Sbjct: 9   SSKIDGAAPRSRSPHRRQPHHSRSSSNNISSSLH 42


>AF047657-1|AAK18951.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein54 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 101 FLSPSAVLDCDPLYEQYVRRIPAPHEGI 184
           F+ P A++ C P++ + + R P P  G+
Sbjct: 292 FVDPVAIILCLPVFRERILRFPKPVVGV 319


>Z81586-11|CAF31485.1| 1165|Caenorhabditis elegans Hypothetical
           protein T05F1.6 protein.
          Length = 1165

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 88  LPSTFSVTISCSRL*PSLRAIC-PKNSSTPRRHIVESLVLI*SSLRID 228
           LP+T SV      L  +   I  P   STP  HIV+S V+  SS+ I+
Sbjct: 22  LPTTTSVLDKSRSLFGNSAVISTPARDSTPDGHIVDSSVITKSSVIIE 69


>Z68115-2|CAA92167.1|  914|Caenorhabditis elegans Hypothetical
           protein F19H6.3 protein.
          Length = 914

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 153 SEEFQHPTKAYSGKSSFDMKLSQNRHVAAL 242
           S ++ HP   ++ +SS + +L+QN+ V  L
Sbjct: 306 SNKYNHPVSTFATESSRNPELAQNKSVETL 335


>Z29094-8|CAA82337.1|  254|Caenorhabditis elegans Hypothetical
          protein C07A9.10 protein.
          Length = 254

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 89 KRPRGRSPTRWSD*IRSSL 33
          KRP G+ P RW+D +R  +
Sbjct: 14 KRPVGKPPMRWTDSLRKEI 32


>U40943-5|AAK39235.2|  279|Caenorhabditis elegans Hypothetical
           protein F47F2.3 protein.
          Length = 279

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 17  CGS*CLEKIVFSPTISWDCVLWDVCHLP 100
           C   C E+ + +P +   C+  +VCH P
Sbjct: 139 CMPDCTEECITAPPLMVPCIFDNVCHCP 166


>AF022972-12|AAC48232.1|  363|Caenorhabditis elegans Seven tm
           receptor protein 204 protein.
          Length = 363

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 169 TPRRHIVESLVLI*SSLRIDTLPLWCERLSMESVTFFCGCIF*RRVFGL 315
           +P  H   S  L+  +L+  ++P W  R+ + +   F GC     +FG+
Sbjct: 64  SPFAHAYGSTFLVIVNLKKTSIPRWVHRILLSAYCGFYGCSM--AIFGI 110


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,537,935
Number of Sequences: 27780
Number of extensions: 226601
Number of successful extensions: 615
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)