Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5523
         (413 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   3.2  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.3  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   7.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    20   9.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    20   9.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    20   9.6  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    20   9.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    20   9.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 329 QCAGLRSLSEYGE 367
           QC G+ SLS+Y +
Sbjct: 144 QCCGVHSLSDYND 156


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 235 PLWCERLSMESVTFFCGCIF 294
           PL+C+  +M    F CG I+
Sbjct: 122 PLFCQIYAMLGSLFGCGSIW 141


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 235 PLWCERLSMESVTFFCGCIF 294
           PL+C+  +M    F CG I+
Sbjct: 88  PLFCQIYAMLGSLFGCGSIW 107


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -2

Query: 175 VGCWNS 158
           VGCWNS
Sbjct: 338 VGCWNS 343


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 211 SSLRIDTLPLWCERLSMESVT 273
           +S+R+ +  +W   + M SVT
Sbjct: 106 NSIRVKSYEIWVPDIVMHSVT 126


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 413 IPQVKTKPELAPSHNFLHIQIRSA 342
           +P     P+LAPS  FL   ++++
Sbjct: 267 LPHPPYSPDLAPSDYFLFRSLQNS 290


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 136 SLRAICPKNSSTPR 177
           +LR +C K + TP+
Sbjct: 38  NLRKVCSKKNDTPK 51


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +1

Query: 136 SLRAICPKNSSTPR 177
           +LR +C K + TP+
Sbjct: 12  NLRKVCSKKNDTPK 25


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,521
Number of Sequences: 438
Number of extensions: 2665
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)