Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5521
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    44   1e-05
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   3.2  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   5.7  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   7.5  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    25   9.9  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   9.9  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +1

Query: 151 KPEELAEAGFFYTGQGDK---TKCFYCDGGLKDWESDDVPWEQHARWFDRCAY 300
           +P  +A +GF Y    D      C YCD  L DWE DD P+ +H R    C +
Sbjct: 140 EPSVMAASGFVYNPTADAKDAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVF 192



 Score = 43.6 bits (98), Expect = 2e-05
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
 Frame = +1

Query: 130 WPRCMRQKPEELAEAGFFYTGQG--------DKTKCFYCDGGLKDWESDDVPWEQHARWF 285
           WPR  +  PE LA  GF+Y            D   C+ C     DWE DD P ++H    
Sbjct: 34  WPRA-KPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHS 92

Query: 286 DRCAYVQLVKGRDYIHKVKSEATAISASEEK 378
             C +  ++  ++  ++   +A A++   E+
Sbjct: 93  PSCPWAYILSSKNNPNQ-NPQAAALTKCREQ 122


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +3

Query: 123 KGLAEMYAPKTRGTGRGRILL 185
           +G+ ++  PK RG+G GR+L+
Sbjct: 300 QGILKVNVPKQRGSGSGRLLM 320


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +1

Query: 127 DWPRCMRQKPEELAEAGFFYTGQGDKTKCFYCDGGLKDWESDDVPWEQHARWFDRCAYV 303
           D PR ++ K   +    F Y    D   C +CD GL  W       E  A   ++C  V
Sbjct: 223 DIPRHIKFKGSVIPATSFIY----DFNACVFCDDGLVVWTRYVKKIEMKAVSIEQCLRV 277


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 511 DGGRTGTKHTLR-SSEITYF-TYFRVIPNVSRP 419
           DG R G     R SS++    TY + IPNVS+P
Sbjct: 593 DGNRDGVHPKSRPSSKVNLVDTYPQTIPNVSKP 625


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 134 RDVCAKNPRNWQRPDSSI-QAKVTKRN 211
           R +C     NW+RPD SI + +  +RN
Sbjct: 414 RQICDYVCANWKRPDKSIWEVRGQERN 440


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 217 YCDGGLKDWESDDVPWEQHARWFDRCAYVQLVKGRDYIHKV 339
           +C G L DW +         R  D+ A VQL K +  I ++
Sbjct: 693 FCLGNLHDWNTSSSVDVGELRGIDKLALVQLDKFQTEIREL 733


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,351
Number of Sequences: 5004
Number of extensions: 48120
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)