Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5521
(555 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0818 - 24963652-24964983 32 0.27
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963... 31 0.82
07_03_1174 + 24538522-24538682,24539229-24539430,24539529-245396... 29 1.9
09_03_0099 + 12353777-12353877,12354022-12354220,12354720-123548... 29 3.3
09_03_0073 - 12092566-12092645,12092788-12092869,12092979-120932... 28 4.4
07_01_0529 - 3922868-3923143,3924019-3924141 28 4.4
03_02_0220 - 6531255-6532667 28 4.4
01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229 28 4.4
08_01_0261 + 2131189-2131737 28 5.8
11_06_0154 + 20707811-20708210,20709252-20709523 27 7.6
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 27 7.6
06_03_0493 + 21402536-21404599 27 7.6
04_04_1601 + 34707975-34708209,34708598-34709970 27 7.6
03_01_0245 + 1916718-1917443,1917534-1917719 27 7.6
02_05_0178 - 26513403-26513983,26515295-26515949 27 7.6
>06_03_0818 - 24963652-24964983
Length = 443
Score = 32.3 bits (70), Expect = 0.27
Identities = 18/53 (33%), Positives = 26/53 (49%)
Frame = -2
Query: 497 GHKAHVTLLGNNIFYIF*SHPKCFSPS*ATFLVKSLVAACFSSLADIAVASDF 339
G+ +HV + F ++P C +PS AT L L+AA F L + V F
Sbjct: 72 GNASHVVGISLGYVSDFSANPSCAAPSAATLLTSGLLAASFPRLRSLFVYGCF 124
>01_01_1197 -
9630506-9630681,9630774-9630805,9630894-9630988,
9631569-9631642,9631732-9631843,9631967-9632030,
9632210-9632275,9632396-9632526,9632884-9633021,
9633115-9633227,9633306-9633471,9633588-9633701,
9633791-9633853,9633953-9634060,9634143-9634259,
9634343-9634505,9634646-9634743,9634852-9634949,
9635054-9635190,9635309-9635530,9635625-9635830,
9636758-9636845,9638085-9638668
Length = 1054
Score = 30.7 bits (66), Expect = 0.82
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 194 WPV*KNPASASSSGF-WRIHLGQSLEGGDPRGLG 96
W + + S+ + GF W + +EGG+PRG+G
Sbjct: 164 WSIRQRCPSSKADGFGWVVEENTGVEGGEPRGIG 197
>07_03_1174 +
24538522-24538682,24539229-24539430,24539529-24539675,
24539832-24539944,24540580-24540791,24541194-24541258,
24541581-24541751,24542543-24542887,24542980-24543173,
24543292-24543448,24543946-24544010,24544166-24544331
Length = 665
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 175 GFFYTGQGDKTKCFYCDGGLKDWESDDVPWE 267
G FY +GD + CF +G K + + +VPWE
Sbjct: 212 GSFYPAEGDASYCFIGEGDGKGY-NINVPWE 241
>09_03_0099 +
12353777-12353877,12354022-12354220,12354720-12354845,
12354935-12355093,12356286-12356415,12356551-12356592,
12357507-12357806,12357933-12357984,12358157-12358234,
12359133-12359229
Length = 427
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 15 AVGRDECGASAGTQPPRMPGPVHARYSTEAARVATFKGLAEMYAPKTRGTGRGR 176
A G D+ GA G + PR P A+Y AA A +G+ + P+ R R
Sbjct: 23 AGGDDDDGALPGERKPRFPKGKKAKYRDPAAAAAA-EGIDGLINPELAAERRAR 75
>09_03_0073 -
12092566-12092645,12092788-12092869,12092979-12093236,
12093314-12093463,12093581-12093724,12093744-12094077,
12094639-12094785,12097446-12097695,12100511-12100616
Length = 516
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 391 WWRPVFLR*QISQWP-PTSPYECSHVLSPIAR 299
WW F R S WP S YE + +P+ R
Sbjct: 437 WWSDRFFRGSFSNWPIGVSRYEYDQLRAPVGR 468
>07_01_0529 - 3922868-3923143,3924019-3924141
Length = 132
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 92 LHRGRAGRHLQGTGRDVCAKNPRNWQRPDS 181
LH GR GR R+V RNW+R ++
Sbjct: 103 LHLGRLGRRRSPCLREVAGDRQRNWKRVET 132
>03_02_0220 - 6531255-6532667
Length = 470
Score = 28.3 bits (60), Expect = 4.4
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Frame = -3
Query: 373 LR*QISQWPPTSPYECSHVLSPIARTRSGRTIWRAVPTERHRFPNLLALRRNRSI--SFC 200
LR + + PP+SP S+ LS +A S + AVP P L LR +
Sbjct: 74 LRFLLWRLPPSSPLPSSYALSSLA--ASLPDLPSAVPLLLSSSPQPLPLRHYALLLGISA 131
Query: 199 HLGLY-RRIRPLPVPRVFGAYISASPLKVATRAASVEYRACTGPGMRGGC 53
H GL+ + L R FG A+ + A R+A C G+ C
Sbjct: 132 HAGLFPASLALLRHMRSFGLAPDAACFRSALRSAGSPGDVCAVLGIMSAC 181
>01_01_0852 + 6652209-6652576,6653666-6654072,6654207-6654229
Length = 265
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 256 VPWEQHARWFDRCAYVQLVK-GRDYIHKVKSEA 351
VPWE H R FD + +L K G+ Y HKV + A
Sbjct: 186 VPWEAHGR-FDGASEYKLDKNGKIYEHKVHNVA 217
>08_01_0261 + 2131189-2131737
Length = 182
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 100 SVEYRACTGPGMRGGCVPALAPHSSLPTALVPN 2
+V+ A T G G + +AP PTA+ PN
Sbjct: 109 AVKVEAATATGGSGTALSPMAPRPRTPTAMAPN 141
>11_06_0154 + 20707811-20708210,20709252-20709523
Length = 223
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -2
Query: 119 GGDPRGLGGVPRVHGAGHAG 60
GG+ R LG P HGAG AG
Sbjct: 83 GGESRRLGWEPTRHGAGDAG 102
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 39 ASAGTQPPRMPGPVHARYSTEAARVATFKGLAEM 140
ASA PR P P R++ A+RVA + A +
Sbjct: 322 ASAAVDHPRTPPPTGPRWNDTASRVAQSRSFAAL 355
>06_03_0493 + 21402536-21404599
Length = 687
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 346 PTSPYECSHVLSPIARTRSGRTIWR 272
P + C+H+L +AR RSGR + R
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRR 178
>04_04_1601 + 34707975-34708209,34708598-34709970
Length = 535
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -2
Query: 122 EGGDPRGLGGVPRVHGAGHAGR 57
E GD G GGV RV G G +GR
Sbjct: 39 EQGDGGGGGGVVRVRGGGGSGR 60
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 91 YRACTGPGMRGGCVPALAPHS 29
++ + G GGCVP LAPH+
Sbjct: 38 HKPSSAVGGGGGCVPCLAPHA 58
>02_05_0178 - 26513403-26513983,26515295-26515949
Length = 411
Score = 27.5 bits (58), Expect = 7.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Frame = +1
Query: 181 FYTG-QGDKTKC--FYCDGGLKDWESDDVPWEQHARWFDRCAY-VQLVKGRDYIH 333
FY G +G+K FY G L+ + + + Q RW C + +VKG DY+H
Sbjct: 193 FYVGPRGEKLLVHPFYAAGSLRRFLQEGIVDSQ--RWNIICKLSISIVKGLDYLH 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,968,538
Number of Sequences: 37544
Number of extensions: 415842
Number of successful extensions: 1719
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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