Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5521
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical pr...    40   0.001
U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of ap...    40   0.001
Z81492-10|CAB04029.2|  322|Caenorhabditis elegans Hypothetical p...    32   0.32 
Z81553-1|CAB04490.2|  327|Caenorhabditis elegans Hypothetical pr...    31   0.42 
Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical p...    31   0.42 
AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical...    29   1.7  
AL023844-9|CAH04760.1|  512|Caenorhabditis elegans Hypothetical ...    29   1.7  
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.      29   2.2  
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein...    29   2.2  
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein...    29   2.2  
AF036688-3|AAB88317.1|  161|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical pr...    28   3.9  
AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen prot...    27   6.9  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   9.1  

>Z77654-2|CAB01130.1|  308|Caenorhabditis elegans Hypothetical
           protein C50B8.2 protein.
          Length = 308

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +1

Query: 127 DWPRCMRQKPEELAEAGFF-YTGQGDKT--KCFYCDGGLKDWESDDVPWEQHARWFDRCA 297
           D  R ++   ++LA+AG+F    + DKT  KC +C   L   ESDD PWE+H ++   C 
Sbjct: 180 DKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVELDFDESDD-PWEEHQKFSASCD 238

Query: 298 YVQLVK 315
           +++L K
Sbjct: 239 FIKLGK 244



 Score = 33.9 bits (74), Expect = 0.079
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 157 EELAEAGFFYTGQGD---KTKCFYCDGGLKDWESDDVPWEQHARWFDRCAYVQL 309
           E+LA AGF+ T   +     KC +C   +   + DD PWE+H      C +V +
Sbjct: 47  EKLARAGFYSTASPEFPASAKCPFCMLEINFEQCDD-PWEKHKSGSPHCEFVMI 99


>U72208-1|AAD00182.1|  308|Caenorhabditis elegans inhibitor of
           apoptosis homolog protein.
          Length = 308

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
 Frame = +1

Query: 127 DWPRCMRQKPEELAEAGFF-YTGQGDKT--KCFYCDGGLKDWESDDVPWEQHARWFDRCA 297
           D  R ++   ++LA+AG+F    + DKT  KC +C   L   ESDD PWE+H ++   C 
Sbjct: 180 DKKRNVKCTSKKLAKAGWFSIANKKDKTSAKCPFCLVELDFDESDD-PWEEHQKFSASCD 238

Query: 298 YVQLVK 315
           +++L K
Sbjct: 239 FIKLGK 244



 Score = 33.9 bits (74), Expect = 0.079
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 157 EELAEAGFFYTGQGD---KTKCFYCDGGLKDWESDDVPWEQHARWFDRCAYVQL 309
           E+LA AGF+ T   +     KC +C   +   + DD PWE+H      C +V +
Sbjct: 47  EKLARAGFYSTASPEFPASAKCPFCMLEINFEQCDD-PWEKHKSGSPHCEFVMI 99


>Z81492-10|CAB04029.2|  322|Caenorhabditis elegans Hypothetical
           protein E03H4.3 protein.
          Length = 322

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -3

Query: 544 PSTARTWRTATDGGRTGTKHTLRSSEITYFTYFRVIPNVSRPLERRS 404
           PS A TW    D GR  +K  L S+ +TY T ++ + +    L R+S
Sbjct: 96  PSIAATWLRRCDNGRFFSKTPLPSANMTYSTVYKNLEDSFFDLFRKS 142


>Z81553-1|CAB04490.2|  327|Caenorhabditis elegans Hypothetical
           protein F56H6.1 protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 544 PSTARTWRTATDGGRTGTKHTLRSSEITYFTYF 446
           PS A TW    D GR  TK  L +S +TY T +
Sbjct: 96  PSIASTWLPKCDNGRFFTKTPLPNSNMTYSTVY 128


>Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical
           protein T09E11.12 protein.
          Length = 323

 Score = 31.5 bits (68), Expect = 0.42
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 544 PSTARTWRTATDGGRTGTKHTLRSSEITYFTYFRVIPNVSRPLERRS 404
           PS A TW    D GR  +K  L +  ITY T ++ + +    L R+S
Sbjct: 96  PSIASTWLRRCDNGRFFSKTPLLNLNITYSTVYKNLEDSYSDLFRKS 142


>AL023844-10|CAA19530.3|  503|Caenorhabditis elegans Hypothetical
           protein Y48A6B.6a protein.
          Length = 503

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 363 RYRSGLRLHLMNVVTSFHQLHVRAAVEPSGVLFPRNVIAF 244
           RY SGL++    +  SF QL + A V  +GV+F   ++ F
Sbjct: 365 RYSSGLQMFGKTLKASFRQLGMMAMVVMTGVIFFSTLVYF 404


>AL023844-9|CAH04760.1|  512|Caenorhabditis elegans Hypothetical
           protein Y48A6B.6b protein.
          Length = 512

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 363 RYRSGLRLHLMNVVTSFHQLHVRAAVEPSGVLFPRNVIAF 244
           RY SGL++    +  SF QL + A V  +GV+F   ++ F
Sbjct: 401 RYSSGLQMFGKTLKASFRQLGMMAMVVMTGVIFFSTLVYF 440


>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 457 FTYFRVIPNVSRPLERRS*SNHWW 386
           F Y+R    V RP E  + SNHWW
Sbjct: 464 FAYYRQTSFVERPEENEN-SNHWW 486


>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
           protein ZK662.4 protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 457 FTYFRVIPNVSRPLERRS*SNHWW 386
           F Y+R    V RP E  + SNHWW
Sbjct: 464 FAYYRQTSFVERPEENEN-SNHWW 486


>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 457 FTYFRVIPNVSRPLERRS*SNHWW 386
           F Y+R    V RP E  + SNHWW
Sbjct: 464 FAYYRQTSFVERPEENEN-SNHWW 486


>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 457 FTYFRVIPNVSRPLERRS*SNHWW 386
           F Y+R    V RP E  + SNHWW
Sbjct: 464 FAYYRQTSFVERPEENEN-SNHWW 486


>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
           protein.
          Length = 1440

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 457 FTYFRVIPNVSRPLERRS*SNHWW 386
           F Y+R    V RP E  + SNHWW
Sbjct: 464 FAYYRQTSFVERPEENEN-SNHWW 486


>AF036688-3|AAB88317.1|  161|Caenorhabditis elegans Hypothetical
           protein C24D10.6 protein.
          Length = 161

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 226 GGLKDWESDDVPW-EQHARWFDRCAYVQLVKGRDYIHKVKSEATAISASEEKQAATN 393
           G LK WE DDVP  +QH  + D C +    +   Y    +      S +  KQ+ T+
Sbjct: 60  GCLKKWEFDDVPCSKQHTLYMD-CVHKGAEEAAAYRDATRKGTLGESGAGGKQSMTS 115


>Z79604-4|CAB60456.1|  598|Caenorhabditis elegans Hypothetical
           protein ZK662.5 protein.
          Length = 598

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 463 TYFTYFRVIPNVSRPLERRS*SNHWW 386
           T   ++R I  V RP E+   SNHWW
Sbjct: 446 TELAHYRQILTVERP-EKHENSNHWW 470


>AF003139-6|AAB54156.1|  327|Caenorhabditis elegans Collagen protein
           45 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 494 ARAAPVGGGAPSARCRR 544
           A AA  GGGAP A CRR
Sbjct: 113 AEAAGGGGGAPHAECRR 129


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 199 DKTKCFYCDGGLKDWESDDVPWEQHARWFDRCAYVQLVKGRDYIHKVKSEATAISASEEK 378
           ++TKCFYCD    +W+    P+    R  +    V   K R++ ++ ++ A  +S S + 
Sbjct: 74  EQTKCFYCD-SRTEWKPQREPYRLSHRIENVVTEVMDDKNRNW-YQSENGAQNVSISFDL 131

Query: 379 QA 384
           +A
Sbjct: 132 EA 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,702
Number of Sequences: 27780
Number of extensions: 298440
Number of successful extensions: 919
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)