Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5519
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58756-1|AAC48085.1|  314|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine rece...    27   8.3  

>U58756-1|AAC48085.1|  314|Caenorhabditis elegans Hypothetical
           protein F58F9.4 protein.
          Length = 314

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +3

Query: 96  YFELYSVHF-FVLTY---LRNSATDSKVPIVVTERGELAKKLSYYIK 224
           Y ++++VHF F+L     LRN  TD     V+T+R ++ +K ++ IK
Sbjct: 265 YPQVFAVHFGFILDIKQILRNLKTDCTGKTVITQRQKVGQKFAWTIK 311


>U53339-6|AAA96202.1|  348|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 12 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +1

Query: 334 YHINVRYFLFHCCPLILT*YFFPYSHIIFLPLT*IYPIYP 453
           YH  V +F+   C LI+    F Y H+I L    I  I P
Sbjct: 80  YHFFVPFFVTSNCDLIINATLFKYGHMIALIFMTIPMILP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,316,249
Number of Sequences: 27780
Number of extensions: 308874
Number of successful extensions: 648
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)