Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5516
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   4.5  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    25   7.9  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   7.9  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 386 FLNNSYRLYLAVFYSSKFSCLTNVDGKQI 300
           F+N  +   LAVF+SSK++     +G+ I
Sbjct: 197 FINFVFHSLLAVFFSSKYTSYAQKEGQPI 225


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 365 LYLAVFYSSKFSCLTNVDGKQIKIIQSNTGHLFID 261
           LY  +  SS+   L     KQ K  +SNTG+ F+D
Sbjct: 14  LYKDIAESSESGVLRQKPSKQKKSKESNTGNGFLD 48


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 314  QHLSNMRISKNKKQLNIIDRN 376
            QHLSN+  + N+K LNI + N
Sbjct: 986  QHLSNLEKAINEKNLNIRELN 1006


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,378
Number of Sequences: 5004
Number of extensions: 38988
Number of successful extensions: 93
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)