Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5512
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    28   0.51 
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   4.7  
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    25   6.2  

>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 28.3 bits (60), Expect = 0.51
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +1

Query: 46  LFAISVFVLAVIINYIFILTFFFSTIYISIQYSKAIYSKF*LSLISDVVDFTYKS 210
           +FA   ++   I+ Y+F +      IY+ +  SK ++S F L L +D  +  + S
Sbjct: 108 IFAFVYWITTAIVGYLFKIVRAPFYIYVLLILSKRLHSIFILRLFNDGFNSLFSS 162


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 49   FAISVFVLAVIINYIFILTFFFSTIYIS 132
            F I+ F++  +IN  F   FFF   Y S
Sbjct: 1166 FIIAFFLVEAVINCCFATLFFFGWYYPS 1193


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 46  LFAISVFVLAVIINYIFILTFFFSTIYISIQYSKAIY 156
           +FA+ +  LAV+ NYI I T  +   +I I    A++
Sbjct: 404 IFAVCMGALAVLFNYIGI-TISWIITFIGIALGPAVF 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,316
Number of Sequences: 5004
Number of extensions: 25801
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)