Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5512
         (417 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M21329-1|AAA28608.1|  916|Drosophila melanogaster protein ( D.me...    27   10.0 
AE014297-3375|AAS65198.1|  920|Drosophila melanogaster CG10367-P...    27   10.0 
AE014297-3374|AAF56175.1|  920|Drosophila melanogaster CG10367-P...    27   10.0 

>M21329-1|AAA28608.1|  916|Drosophila melanogaster protein (
           D.melanogaster 3-hydroxy-3-methyglutaryl coenzyme A
           reductase (HMG CoA) gene, completecds. ).
          Length = 916

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 16  LSTLENIQ*QLFAISVF-VLAVIINYIFILTFFFSTIYISIQYSKA 150
           + TL  +Q +L  + +F VL+V++NY+  +TF+ + + +    S++
Sbjct: 223 VGTLSGVQ-RLEVLCMFAVLSVLVNYVVFMTFYPACLSLIFDLSRS 267


>AE014297-3375|AAS65198.1|  920|Drosophila melanogaster CG10367-PB,
           isoform B protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 16  LSTLENIQ*QLFAISVF-VLAVIINYIFILTFFFSTIYISIQYSKA 150
           + TL  +Q +L  + +F VL+V++NY+  +TF+ + + +    S++
Sbjct: 226 VGTLSGVQ-RLEVLCMFAVLSVLVNYVVFMTFYPACLSLIFDLSRS 270


>AE014297-3374|AAF56175.1|  920|Drosophila melanogaster CG10367-PA,
           isoform A protein.
          Length = 920

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/46 (28%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
 Frame = +1

Query: 16  LSTLENIQ*QLFAISVF-VLAVIINYIFILTFFFSTIYISIQYSKA 150
           + TL  +Q +L  + +F VL+V++NY+  +TF+ + + +    S++
Sbjct: 226 VGTLSGVQ-RLEVLCMFAVLSVLVNYVVFMTFYPACLSLIFDLSRS 270


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,782,348
Number of Sequences: 53049
Number of extensions: 240688
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1251032760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)