Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5512
         (417 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical pr...    28   3.1  
Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like pro...    27   7.2  
AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1 re...    27   7.2  

>Z83218-4|CAB05690.2|  706|Caenorhabditis elegans Hypothetical
           protein C31A11.7 protein.
          Length = 706

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 9/34 (26%), Positives = 23/34 (67%)
 Frame = +3

Query: 57  FCVRISRYYQLYFYINVFF*HNLYFYSIFKSYLF 158
           +C  I  ++ L++Y+N+    +++FYS F+ +++
Sbjct: 609 YCAYIVHFFTLFWYLNIND-SSMHFYSTFQVFIY 641


>Z93381-5|CAB07608.2|  720|Caenorhabditis elegans Hypothetical
           protein F28G4.5 protein.
          Length = 720

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 57  FCVRISRYYQLYFYINVFF*HNLYFYSIFKSYLF 158
           +C  I  Y  LYFY+ +     L+FYS F+ +++
Sbjct: 605 YCAYIVHYVVLYFYLMIGD-GPLHFYSTFQLFMY 637


>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 67  VLAVIINYIFILTFFFSTIY 126
           V+A +IN +F+L FF + IY
Sbjct: 187 VVAFVINLVFVLPFFLTGIY 206


>Z46676-6|CAA86666.1|  503|Caenorhabditis elegans Hypothetical
           protein C08B11.8 protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 55  ISVFVLAVIINYIFILTFFFSTIYISIQYS 144
           IS+F L V  N+   L+FFF+   +S  Y+
Sbjct: 410 ISIFSLCVKDNFALSLSFFFAYFVVSYAYT 439


>AF117337-1|AAD22029.1|  277|Caenorhabditis elegans Hus1-like
           protein protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 127 ISIQYSKAIYSKF*LSLISDVVDFTYKSKKNNLIFFPA*SDSL 255
           +SI YS  I+ KF      D+V    ++++ NLI+F    DSL
Sbjct: 57  LSIPYSSQIFRKF------DMVGMNPRNEEQNLIYFELEIDSL 93


>AF106587-2|AAC78225.1|  277|Caenorhabditis elegans Human hus1
           related protein 1 protein.
          Length = 277

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +1

Query: 127 ISIQYSKAIYSKF*LSLISDVVDFTYKSKKNNLIFFPA*SDSL 255
           +SI YS  I+ KF      D+V    ++++ NLI+F    DSL
Sbjct: 57  LSIPYSSQIFRKF------DMVGMNPRNEEQNLIYFELEIDSL 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,993,387
Number of Sequences: 27780
Number of extensions: 139334
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)