Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5512
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   1.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   1.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.2  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  QLFAISVFVLAVIINYIFILTFFFSTIYISIQ 138
           ++F   +F+ A +I  IFI+  F+S +  SI+
Sbjct: 218 KVFVTCIFIWAYVIPLIFII-LFYSRLLSSIR 248



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 76  VIINYIFILTFFFSTIYISIQYSKAIYS 159
           V +  IFI  +    I+I + YS+ + S
Sbjct: 219 VFVTCIFIWAYVIPLIFIILFYSRLLSS 246


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 43  QLFAISVFVLAVIINYIFILTFFFSTIYISIQ 138
           ++F   +F+ A +I  IFI+  F+S +  SI+
Sbjct: 218 KVFVTCIFIWAYVIPLIFII-LFYSRLLSSIR 248



 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 76  VIINYIFILTFFFSTIYISIQYSKAIYS 159
           V +  IFI  +    I+I + YS+ + S
Sbjct: 219 VFVTCIFIWAYVIPLIFIILFYSRLLSS 246


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 43  QLFAISVFVLAVIINYIFILTFFFSTIYI 129
           +L  ++VF++A  +    +LT   S IYI
Sbjct: 72  RLNKLAVFIVAGAVGVFSVLTILISYIYI 100


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 352 AVYTTGSETRPTEKIRLETQ 411
           A  TTG+ T PT ++R   Q
Sbjct: 252 AAMTTGTTTIPTRRLRKRRQ 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,497
Number of Sequences: 438
Number of extensions: 1819
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)