Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5511
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    28   1.1  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   5.9  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        26   5.9  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   5.9  

>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 302  SERNNAATLQLDGQHFYSYLCLSSLMINECCRSFRTRHVHITVEPINCNI 451
            S RNN   L + G   Y +   S L +NE   S       IT  P+  NI
Sbjct: 1120 SNRNNVFYLNIPGNECYLFEAPSVLAMNEWIHSLNFNAAMITCPPLPENI 1169


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 170 ITTLSRISRSCYIFRRSCYIVLF 102
           +T LS +SRSC  FR+     LF
Sbjct: 342 VTILSSLSRSCQKFRKKIAFTLF 364


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 381 IMRDERHK*L*KCCPSNCRVAALF 310
           I+ DE H+ + K  P+ CR+ ALF
Sbjct: 244 IIDDEMHEIMVKPLPAGCRLTALF 267


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 342 CPSNCRVAALF-LSLLLTRIDAPGVDEMGIFLFT 244
           CP NC++ AL+ L  +   + AP     G+ LF+
Sbjct: 51  CPPNCKLPALYLLDSISKNLGAPYTYFFGLHLFS 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,845
Number of Sequences: 5004
Number of extensions: 46413
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)