Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5510
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    29   0.70 
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    28   1.6  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    26   6.5  

>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = -1

Query: 724 KILISKYKPIKNKMQPKMNSTDFAFNHLNIKVSFHLFARLFTMFSKKISLLARF 563
           +IL+       N    +    DFAF   N + S +L+ARL   F  ++    ++
Sbjct: 204 EILLMNQNSFLNNFNFEHIKADFAFRQKNYEESIYLYARLLIKFPNRLDYSEKY 257


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 474 CKLCRLHCN*EFVSTLCVVRKGFS*KTNCGSYLS 373
           C+ CR+ C+  F++  C  +   S   N G Y S
Sbjct: 29  CETCRIWCSSPFMAFSCTQKPSVSENENVGKYAS 62


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 608 SFYYVQQKNFF---ISEI*FGPLNIDTGVHRVESDF 510
           +F+  QQKN +   IS + F PLN    +H  E DF
Sbjct: 653 TFFEHQQKNSYLDAISHLPFIPLNSCLWLHEFEKDF 688


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,627
Number of Sequences: 5004
Number of extensions: 51693
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)