Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5508
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   0.76 
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos...    27   1.0  
SPBC29A3.08 |pof4||elongin-A, F-box protein Pof4|Schizosaccharom...    26   3.1  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   7.1  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   9.4  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 19/60 (31%), Positives = 30/60 (50%)
 Frame = -3

Query: 217 RALHSFRDRRSLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPTLAKATTANDATKI 38
           RAL++     S    + NY  +     R  F LVS LRL   C  P L K+++ +++ +I
Sbjct: 519 RALYN-EQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLRLRQFCCHPWLVKSSSLDNSFRI 577


>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -3

Query: 442 RGRVSRLYTEQAPSLPPQQF 383
           RG+V RLYTE+A SL  ++F
Sbjct: 359 RGKVFRLYTEKAYSLMKEEF 378


>SPBC29A3.08 |pof4||elongin-A, F-box protein
           Pof4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 84  LLPWQRQPRPTMPPK*PCTSLWYC 13
           ++P +R+PR   PPK P     YC
Sbjct: 122 IVPLEREPRAARPPKRPRPMSNYC 145


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 177 ATSEIMSSIRSYVIDAPFVLFLLFDCL 97
           A S I+SSI  Y +     L LL+DC+
Sbjct: 700 AYSSILSSIEEYHLRFGLKLMLLWDCV 726


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -1

Query: 201 FVTAVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLPWQRQPR 58
           F+T V F+ T   + S+R    +  FVL     C      L W   PR
Sbjct: 190 FITVVLFLMTVASLPSVRRKFFEWFFVLH--HTCSVLIIFLIWLHHPR 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,330,507
Number of Sequences: 5004
Number of extensions: 19673
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)