Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5508
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   4.8  

>Z81086-6|CAB03116.1|  610|Caenorhabditis elegans Hypothetical
           protein F53B6.6 protein.
          Length = 610

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -1

Query: 192 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLPWQR 67
           +++F ++SE+  S  S VI +  +L  LF C+   FL+  QR
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQR 594


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 189 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLP 76
           +  IAT  ++S+I + ++  P+ +F    C RC  L+P
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRC-LLMP 319


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,502,973
Number of Sequences: 27780
Number of extensions: 116817
Number of successful extensions: 375
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)