Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5507
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    30   0.40 
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    25   8.5  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   8.5  

>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = -1

Query: 411 RRIYIECFENVCCYLFLLKLYG 346
           RR +I CFENV   LFL+ L G
Sbjct: 248 RRKWIHCFENVTALLFLVSLAG 269


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 33  GSGHRGSLRGANKLARRARSFKDDLLERISNMRSP 137
           G  H GS     ++  +   FKDDL   IS+  SP
Sbjct: 161 GYSHLGSEESNGEIPDKWEDFKDDLTFEISSKFSP 195


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -2

Query: 662 VCTYVFCMFPGDSKMAESISMKFSGNLQIDLAGNPVPGFLAF 537
           V TY   +F        S  +   G LQ+ LA NPV   LAF
Sbjct: 430 VVTYETSLFLNFLDEKVSAELLLLGTLQLPLAWNPVQESLAF 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,499
Number of Sequences: 5004
Number of extensions: 66850
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)