Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5506
(660 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003740-2|AAM15562.2| 330|Caenorhabditis elegans Hypothetical ... 33 0.24
Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical pr... 30 1.7
Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical p... 30 1.7
Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical pr... 28 6.8
Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical p... 28 6.8
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 28 6.8
U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protei... 27 8.9
U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protei... 27 8.9
U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protei... 27 8.9
U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protei... 27 8.9
AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical ... 27 8.9
>AF003740-2|AAM15562.2| 330|Caenorhabditis elegans Hypothetical
protein C41D11.4 protein.
Length = 330
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/56 (23%), Positives = 28/56 (50%)
Frame = +2
Query: 482 YLSPTPLKRKFPLPSRNTSNTQYTYLSPTPLKRKYLYEVKVHVDKPYEVKVKVPTP 649
++ +P K+ P + S +PLK++Y+ + +++ E++ VPTP
Sbjct: 203 FVPKSPTKKPITSPIKKRVRQDSENRSTSPLKKRYISSFSIRLEEEKEIEKAVPTP 258
>Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical protein
F25H2.13 protein.
Length = 994
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 485 LSPTPL---KRKFPLPSRNTSNTQYTYLSPTPLKRKYLYEVKVHVDKPYEVKVKVPT 646
LS PL KRKF + + S + T S P K+K L + + Y+ +++PT
Sbjct: 864 LSSIPLESNKRKFKIETPGPSTSTLTQKSEPPKKKKILLLTRNTLPDEYQKAIEIPT 920
>Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 485 LSPTPL---KRKFPLPSRNTSNTQYTYLSPTPLKRKYLYEVKVHVDKPYEVKVKVPT 646
LS PL KRKF + + S + T S P K+K L + + Y+ +++PT
Sbjct: 864 LSSIPLESNKRKFKIETPGPSTSTLTQKSEPPKKKKILLLTRNTLPDEYQKAIEIPT 920
>Z81086-6|CAB03116.1| 610|Caenorhabditis elegans Hypothetical
protein F53B6.6 protein.
Length = 610
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = -1
Query: 189 AVAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLGKGNHGQRCHQNNR 31
+++F ++SE+ S S VI + +L LF C+ FL+ + N H + R
Sbjct: 553 SLSFQSSSEVCLSKTSTVIFSTAILLALFCCVTVKFLVTRQRNRQLLHHASKR 605
>Z75531-12|CAA99806.4| 348|Caenorhabditis elegans Hypothetical
protein C54D10.6 protein.
Length = 348
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 186 VAFIATSEIMSSIRSYVIDAPFVLFLLFDCLRCAFLLLG 70
+ IAT ++S+I + ++ P+ +F C RC + G
Sbjct: 283 LCLIATHGLLSTITTIMVHKPYRVFFFILCRRCLLMPAG 321
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = -3
Query: 184 SLHRYLRNYVLHKILCHRCPFCLVSSLRLPSVCLSPPWQRQPRPTMPPK*PCTSLWSP 11
S H Y + C CP + R+P C +P P P PP PC + + P
Sbjct: 12 SFHFAFAQYPFGRGGCGGCPTPMCQP-RMP--CAAPMPMPMPMPVCPPPPPCPAQFCP 66
>U80437-4|AAK68244.1| 90|Caenorhabditis elegans Neurabin protein
1, isoform c protein.
Length = 90
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 82 SPPWQRQPRPTMPPK*PCTSLWSP 11
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-3|AAK68243.1| 561|Caenorhabditis elegans Neurabin protein
1, isoform b protein.
Length = 561
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 82 SPPWQRQPRPTMPPK*PCTSLWSP 11
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-2|AAL16317.1| 658|Caenorhabditis elegans Neurabin protein
1, isoform d protein.
Length = 658
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 82 SPPWQRQPRPTMPPK*PCTSLWSP 11
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>U80437-1|AAB37620.1| 721|Caenorhabditis elegans Neurabin protein
1, isoform a protein.
Length = 721
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 82 SPPWQRQPRPTMPPK*PCTSLWSP 11
SP QRQP P +PPK P SP
Sbjct: 37 SPRLQRQPPPPLPPKPPSQCPPSP 60
>AC024877-2|AAF60905.2| 608|Caenorhabditis elegans Hypothetical
protein Y95B8A.7 protein.
Length = 608
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 413 RIQSRNTSPIPSRRKYPMR*KCPYLSP-TPLKRKFPLPSRNTSNTQYTYLSP 565
R Q + + +P+ + P K P+ +P P R+F + T N +Y L+P
Sbjct: 221 RSQEKRKNQLPAVHEPPSFMKTPWFAPPAPEGREFNIVDDRTINEKYAGLNP 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,279,460
Number of Sequences: 27780
Number of extensions: 221958
Number of successful extensions: 764
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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