Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5505
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    30   1.8  
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   3.2  
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    28   5.5  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -2

Query: 249 KTSGAFVLKRSTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 130
           K  G  ++ R TGV I   G N   +I T      DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 195 AGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIMICVISGEA 64
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G A
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHA 73


>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
            15222420-15226194
          Length = 2502

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 22/69 (31%), Positives = 32/69 (46%)
 Frame = +1

Query: 10   GLKYSYNGCPTLQTETHYCFTTNYANHNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIG 189
            GL+    GC  L+T T+YC +      N A +I  + C +  +EV R  +L TY   +I 
Sbjct: 2290 GLETISKGCQKLKTLTYYCGSMT----NAAMVIMSSNCPN--LEVFRLSILKTYLPDRIT 2343

Query: 190  TRLRDSNTG 216
                D   G
Sbjct: 2344 GEPMDEGFG 2352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,151
Number of Sequences: 37544
Number of extensions: 287426
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)