Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5504
         (495 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ...    26   3.6  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   3.6  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   4.7  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   4.7  
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos...    25   6.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   6.3  
SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces...    25   8.3  

>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 156 VWLSNSELLFTFSVLEMTVDIEEEALYL-SMPDQLKDKFISLSFISL 293
           ++L N + L +  + E T D+E+++LYL ++P    +K +  +   L
Sbjct: 14  IYLENKKRLHSIFLKEDTEDVEKKSLYLINVPITTTEKILKRAISQL 60


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +3

Query: 237 LSMPDQLKDKFISLSFISLCTK 302
           LS P+ L DK    SFI LC K
Sbjct: 256 LSSPEILADKIFLSSFIQLCKK 277


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 288 SLCTKEKGENWYVYLFTLGRIVYLLSGRTF 377
           S+C +   + W  +LFT+G +  L+    F
Sbjct: 240 SVCHRADNKGWRYFLFTMGGMTLLMFAARF 269


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +3

Query: 255 LKDKFISLSFISLCTKEK--GENWYVYLFTLGRIVYLLSGRTF 377
           LKD+ I+L+ I   TK+   G  W++ + T+G IV     R F
Sbjct: 639 LKDEHITLAKIR-STKDTFTGVQWFISIVTIGTIVLWCLERRF 680


>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
           Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -1

Query: 405 NPIAAPYPYKTSYHSINKQS-FQV*INTRTNFH 310
           +PI  PY    S H++ K + F + INT    H
Sbjct: 280 DPIVIPYTINVSEHTVEKVTIFDIRINTEDPRH 312


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 261 LSVDLALKDTEPPLQCQQSFQVLKR 187
           LSV +  KD  PP   +Q FQ+L R
Sbjct: 760 LSVLMVYKDVLPPTAHEQFFQLLNR 784


>SPAC821.07c |moc3||transcription factor Moc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 497

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 472 SDQHSKLDTIFSN*ETDFEEEKESHCCTLSLQNVLPLN 359
           +D  S L  +     TD    + S+ C LSLQNV   N
Sbjct: 427 NDVLSGLQQLMQEECTDIAVLRTSYLCVLSLQNVFASN 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,843,291
Number of Sequences: 5004
Number of extensions: 33810
Number of successful extensions: 81
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)