Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5504
         (495 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0013 - 8957277-8957355,8957485-8957591,8957700-8957915,895...    28   3.6  
08_02_0083 + 12063349-12063406,12066151-12066480,12066529-120671...    27   6.3  

>11_03_0013 -
           8957277-8957355,8957485-8957591,8957700-8957915,
           8958191-8958907,8959483-8959656,8960292-8960546
          Length = 515

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 16  VYNK-NLIFISVIWYL*HKFFTNLSRDQL 99
           V+N  NLI ++  WY    FF N S DQL
Sbjct: 275 VFNMTNLIIVATSWYRPKTFFLNCSDDQL 303


>08_02_0083 +
           12063349-12063406,12066151-12066480,12066529-12067174,
           12089873-12089933
          Length = 364

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -3

Query: 412 EKESHCCTLSLQNVLPLNK*TILPSVNKYTYQFSPFSLVHNEIKDSDINLSFS*SGIERY 233
           +KE  C   SL ++  L     +P+VN Y   F     + NE+++ ++  S +  G  ++
Sbjct: 154 DKEELCDNASLISMPQLVNEHAIPTVNSYCTDFKHVVHIANEVEERELRSSLNNLGYVQF 213


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,009,110
Number of Sequences: 37544
Number of extensions: 181551
Number of successful extensions: 317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)