Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5503
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    69   9e-13
SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr 2|||...    44   2e-05
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    26   4.7  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   8.3  
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy...    25   8.3  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 68.5 bits (160), Expect = 9e-13
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
 Frame = +3

Query: 336 AEQILSKIPPHDDK-LTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRR-- 506
           A+ IL ++ P  +K  +   G+Y FHY+ +N + Y CI +  + R  AF +L E+     
Sbjct: 29  AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 88

Query: 507 XXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNID 686
                        PYA   +F   +    + Y+  R  DN+ +++ EL ++  +M KNI+
Sbjct: 89  NSFGEEALQPGLRPYAF-VQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIE 147

Query: 687 NMAMRGEKLE 716
           ++  RG+ LE
Sbjct: 148 DLLYRGDSLE 157


>SPBC13G1.11 |ykt6||SNARE Ykt6|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 197

 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
 Frame = +3

Query: 396 NYLFH-YIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFG 572
           NY+FH Y   + L     +D ++    A+  LN+I                  A+   F 
Sbjct: 63  NYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWES--GAVTLSFP 120

Query: 573 RVLATEMKHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMRGEKLE 716
             L T +  Y + +  D I RV  ELDE K+++ K I+++  RGEKL+
Sbjct: 121 E-LDTYLSKYQDPKQADTIMRVQQELDETKDVLHKTIESVLARGEKLD 167


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 376 LSSWGGIFDKICSATSVKLP*QVAYLARTTVPLATILNNIGIVN 245
           L++ G +FD+IC+  S       A L RTT      L++ GIV+
Sbjct: 110 LATGGELFDRICAKGSF-YEADAAALMRTTTSAVKYLHDNGIVH 152


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 576  VLATEMKHYSESRD--LDNISRVHGELDELKNIMVKN 680
            V + E+K + +++   LD I  V G+L  ++++ VKN
Sbjct: 914  VTSEEVKEFQKNKKMVLDGIELVEGDLQIIRSVEVKN 950


>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 594 KHYSESRDLDNISRVHGELDELKNIMVKNIDNMAMR 701
           KH S+S DLD+++        LKNI  K     A R
Sbjct: 293 KHRSKSNDLDSLAATEFGRKGLKNIKSKKRPGKARR 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,235
Number of Sequences: 5004
Number of extensions: 61986
Number of successful extensions: 172
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)