Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5503
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...    50   2e-06
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr...    33   0.16 
Z82256-8|CAJ76927.1|  113|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z82256-7|CAC70077.1|  116|Caenorhabditis elegans Hypothetical pr...    29   4.4  

>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
 Frame = +3

Query: 324 FTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKR 503
           ++  A+ +  K+     + +   G ++FHYI    +    + D  F R  AF +L++I +
Sbjct: 34  YSNQAKMLFKKLNGAPAQQSVESGPFVFHYIIVQNICALVLCDRNFPRKVAFQYLSDIGQ 93

Query: 504 RXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKNIMVKN 680
                        + PY    EF + +    + Y ++     ++ V  EL ++  IMV N
Sbjct: 94  EFLNENSSRIEQVVRPYHF-LEFDKYIQQAKQRYGDTNK-HAMNTVSNELQDVTRIMVTN 151

Query: 681 IDNMAMRGEKLELL 722
           I+++  RGE L +L
Sbjct: 152 IEDVIHRGEALNIL 165


>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical protein
            F36H2.3 protein.
          Length = 1388

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 306  ATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFH 410
            ATC G+ T V  Q +  I P + ++TYS G+ + H
Sbjct: 1175 ATCSGSSTAVGSQCIGVIVPTNAQVTYSDGSMVLH 1209


>Z82256-8|CAJ76927.1|  113|Caenorhabditis elegans Hypothetical
           protein B0513.9b protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 621 DNISRVHGELDELKNIMVKNIDNMAMRGEKLE 716
           + +  +  ++D +K +MV N++ +  RGE+L+
Sbjct: 16  EKMQNLRNQVDSVKAVMVDNVERILERGERLD 47


>Z82256-7|CAC70077.1|  116|Caenorhabditis elegans Hypothetical
           protein B0513.9a protein.
          Length = 116

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +3

Query: 621 DNISRVHGELDELKNIMVKNIDNMAMRGEKLE 716
           + +  +  ++D +K +MV N++ +  RGE+L+
Sbjct: 19  EKMQNLRNQVDSVKAVMVDNVERILERGERLD 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,990,058
Number of Sequences: 27780
Number of extensions: 335229
Number of successful extensions: 910
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)