Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5502
(703 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical pr... 111 4e-25
Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical pr... 58 5e-09
AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of... 58 5e-09
U50069-2|AAB37558.1| 328|Caenorhabditis elegans Hypothetical pr... 30 1.8
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ... 29 3.2
Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical pr... 29 4.3
Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical pr... 27 9.8
AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin ... 27 9.8
AC024803-1|AAL05589.4| 433|Caenorhabditis elegans Hypothetical ... 27 9.8
>U40800-9|AAA81494.1| 316|Caenorhabditis elegans Hypothetical
protein D2096.8 protein.
Length = 316
Score = 111 bits (268), Expect = 4e-25
Identities = 65/184 (35%), Positives = 91/184 (49%)
Frame = +2
Query: 149 EAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGT 328
+ + +LP NV++R+ AL+ LQ + + IE+ FY VH R IV G
Sbjct: 17 DMIQALPLNVKQRVCALKNLQMKTIQIESDFYKRVHELEIEFEGKFKSTFDQRKAIVAGE 76
Query: 329 YEPNDDECLNPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMDPNVKGIPDFWYNI 508
EP ++ P + E ++LA KA E DP+ KGI DFW
Sbjct: 77 VEPTKEQIDTPILEGLEGDQLAELY--------------KAAEA--DPSAKGIKDFWLTA 120
Query: 509 FRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPISFTLEFYFAPNEYFTNTVLTKEYLMK 688
R +++E ++EHD PIL L D+ +DP F +EF+FA N YF N VLTK YL+
Sbjct: 121 LRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKNQVLTKTYLLG 180
Query: 689 CKPD 700
PD
Sbjct: 181 FDPD 184
>Z54236-2|CAE46661.1| 313|Caenorhabditis elegans Hypothetical
protein C27B7.1b protein.
Length = 313
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 485 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 661
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 662 VLTKEY 679
V+TK Y
Sbjct: 137 VITKSY 142
>Z54236-1|CAA90979.2| 312|Caenorhabditis elegans Hypothetical
protein C27B7.1a protein.
Length = 312
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 485 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 661
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 662 VLTKEY 679
V+TK Y
Sbjct: 137 VITKSY 142
>AF321546-1|AAG42102.1| 312|Caenorhabditis elegans suppressor of
presenilin 2 protein.
Length = 312
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 485 IPDFWYNIFRNVSMLSEMMQEHDEPILKCLQDIKVQMHEDPIS-FTLEFYFAPNEYFTNT 661
I +FW F N +LS + E E +L L+D++VQ ED S F + F PNEYFTN
Sbjct: 77 IDNFWQTAFLNHHLLSTAIPEEQEDLLAALRDLEVQEFEDLRSGFKIIMTFDPNEYFTNE 136
Query: 662 VLTKEY 679
V+TK Y
Sbjct: 137 VITKSY 142
>U50069-2|AAB37558.1| 328|Caenorhabditis elegans Hypothetical
protein C09B9.2 protein.
Length = 328
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -2
Query: 690 HFIKYSLVSTVFVKYSFGAK*NSRVKLMGSSCICTLISCKHF 565
HF+ L+ + F++ SF +K ++ G S + ++ +C HF
Sbjct: 134 HFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHF 175
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 262 ECMYFTVKLGLNVDKLLLKSSQGADSPTNI 173
EC++ + K GLNVDK+L +PT I
Sbjct: 188 ECLHISAKSGLNVDKVLEAIIDRVPAPTAI 217
>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
protein W09B6.1a protein.
Length = 2054
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = +2
Query: 377 EEEELARAVQNAAI---TEGEEKKDDKAIEPPMDPNVKGIPDFWYNIFRNVSMLSEMMQE 547
+EE+ QNA + T E++ + + N + +P IF V + + +
Sbjct: 1101 QEEQRVCYAQNAVVDMKTILEKEFRVNRVNTVLCLNDRPLPQL--TIFEQVRLEKDRLPA 1158
Query: 548 HDEPILKCLQDIKVQMHEDPIS 613
+ P+L L ++V H+DP S
Sbjct: 1159 NSYPVLSKLSTVRVSQHDDPTS 1180
>Z81123-2|CAB03365.1| 734|Caenorhabditis elegans Hypothetical
protein T14D7.2 protein.
Length = 734
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = -1
Query: 385 FFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFI---FAFECMYFTVKLGLNVDKL 215
+ F +I P V T++++ F + + LFI V+ I FA C + LN+++L
Sbjct: 648 YLFHMI-PVVLTYMLVPFPIYFNTQIPLFIHCFVQLLITYFFAIICTMVSELPALNIERL 706
Query: 214 LLKS 203
LL S
Sbjct: 707 LLAS 710
>Z46829-1|CAA86862.1| 375|Caenorhabditis elegans Hypothetical
protein T14B1.1 protein.
Length = 375
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 356 NPWRDDTEEEELARAVQNAAITEGEEKKDDKAIEPPMD 469
+P RD+ EE LA+ ++ A GE+++ + EP D
Sbjct: 6 DPGRDEEVEEPLAKKIRVVAQEAGEDEESEMEKEPNAD 43
>Z49072-2|CAB61017.2| 1006|Caenorhabditis elegans Hypothetical
protein T24A11.1b protein.
Length = 1006
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 362 WRDDTEEEELARAVQNAAITEGEEKK 439
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>Z49072-1|CAA88884.1| 938|Caenorhabditis elegans Hypothetical
protein T24A11.1a protein.
Length = 938
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 362 WRDDTEEEELARAVQNAAITEGEEKK 439
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 333 WRNPTDEKIIEEAVKASRI-EGEEKK 357
>AF031519-1|AAC78763.1| 930|Caenorhabditis elegans myotubularin
homologous protein 1 protein.
Length = 930
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 362 WRDDTEEEELARAVQNAAITEGEEKK 439
WR+ T+E+ + AV+ + I EGEEKK
Sbjct: 337 WRNPTDEKIIEEAVKASRI-EGEEKK 361
>AC024803-1|AAL05589.4| 433|Caenorhabditis elegans Hypothetical
protein Y51H7BM.1 protein.
Length = 433
Score = 27.5 bits (58), Expect = 9.8
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 509 ICCTKSLGYPLHW 471
+CC K LGYP +W
Sbjct: 52 LCCEKELGYPSNW 64
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,351
Number of Sequences: 27780
Number of extensions: 322664
Number of successful extensions: 1036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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