Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5499
         (634 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical ...    29   3.7  
AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical ...    29   3.7  
U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    27   8.4  
U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
           protein Y54E2A.6 protein.
          Length = 1798

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
 Frame = +1

Query: 352 MYIKMN----CCSLVSLKLENGWTDSANFGLGLFVLVQRR 459
           +Y++ N    C ++  + L+NGW+ +AN  LG+   V+++
Sbjct: 711 LYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEKQ 750


>AF100306-8|ABB88213.1|  860|Caenorhabditis elegans Hypothetical
           protein T24C4.6a protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 127 IHLICNTKQHRCALSLCPF-LPRNIHIFNYSRSIIRLI 237
           +H+        C LSLC F +P++I +F+YSR  + L+
Sbjct: 524 VHMEEQVMVRNCCLSLCQFEIPQDI-LFDYSRLAVLLV 560


>AF100306-7|ABB88214.1|  895|Caenorhabditis elegans Hypothetical
           protein T24C4.6b protein.
          Length = 895

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 127 IHLICNTKQHRCALSLCPF-LPRNIHIFNYSRSIIRLI 237
           +H+        C LSLC F +P++I +F+YSR  + L+
Sbjct: 524 VHMEEQVMVRNCCLSLCQFEIPQDI-LFDYSRLAVLLV 560


>U80954-4|AAB38097.2|  426|Caenorhabditis elegans Hypothetical
           protein T07F8.2 protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 134 LFVIRNSIGVHYHFVHSCLEIFTYLIIRDP 223
           +FV+ NS+ +    V SC+ I  Y+ IR P
Sbjct: 106 MFVLENSVKITSLTVLSCISIERYITIRKP 135


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 68  CILTHNKLSILDR-RLFLPIPYTLFVIRNSI--GVHYHFV 178
           C+   ++L   DR  L  P+PYT    +     GVHYHFV
Sbjct: 483 CLKLRDRLLESDRITLACPVPYTSRTPKEGEFNGVHYHFV 522


>U40060-4|AAY86193.1|  406|Caenorhabditis elegans Hypothetical
           protein F38B6.8 protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 415 NRSSRSRVLARLTNSNSFLCT*IDYYYSLFPYLPTLY 305
           NRS R+R  ++     SF C  + +Y+ +FP    LY
Sbjct: 224 NRSRRARFASKPVIPKSFRCDHMPHYHYVFPLNMPLY 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,732,306
Number of Sequences: 27780
Number of extensions: 246926
Number of successful extensions: 565
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)