Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5498
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    27   0.80 
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   2.4  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   2.4  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   3.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   4.3  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    24   7.5  

>SPBC32F12.02 |rec14||recombination protein
           Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 0.80
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 161 LAHSAVAVVCLADG*TPTVTVYDTVFNDGVGTAQGH 54
           +A S  + +  A G +  +T+YD +  D VG  +GH
Sbjct: 193 VAFSPGSTLLAAAGDSKMITIYDVLSGDQVGQLRGH 228


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 93  VVYRDSRGLAIGQAYNSDGGVSQANANVIGGVSQAYG 203
           V YR+++ +A  QAY    GV   +   I G+S  YG
Sbjct: 263 VAYRNAKTVAKWQAYGFMNGVLNTDNTSILGLSIDYG 299


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 66  RANPVIKNGVVYRDSRGLAIGQAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLARDGLF 245
           + +P+I NGVVY + +G     +Y       Q   ++  G   AYG +S G  LA   L 
Sbjct: 179 KKSPIIFNGVVYNEMKGQVSDSSYIFYMLFQQ---HLFQGT--AYGFNSGGDPLAIPDLK 233

Query: 246 Y 248
           Y
Sbjct: 234 Y 234


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 246 YPGQAIAKAETYDNDGNLIXRCVSSY 323
           +P   + K ET++N  NL    V+SY
Sbjct: 462 HPSPRLKKEETHENGSNLTNDSVNSY 487


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 189 SQAYGSSSNGGHLARDGLFYPGQAIAKAETYDND 290
           S+++G   N   +A+DGLF   Q + K +T  ND
Sbjct: 316 SKSHGGKQNNS-VAKDGLFDFFQNMIKGKTPQND 348


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 84  KNGVVYRDSRGLAIGQA 134
           +NG  YR++R  AIG+A
Sbjct: 195 RNGKFYREARSAAIGRA 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,304,910
Number of Sequences: 5004
Number of extensions: 22450
Number of successful extensions: 59
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)