Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5498
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0303 - 20010761-20011756 29 0.95
04_03_0138 + 11710595-11711271,11711533-11711665,11711819-117119... 29 0.95
07_03_0116 + 13584689-13584725,13585167-13585234,13586091-135861... 28 2.2
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 28 2.2
08_02_1098 - 24291138-24291851,24292607-24292861 27 2.9
06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281 27 3.9
06_02_0169 - 12535102-12536062,12536949-12537646 27 3.9
06_02_0166 + 12522172-12522890,12523567-12524596 27 3.9
03_06_0656 - 35330109-35331011,35331154-35331360,35331455-353316... 27 3.9
02_05_0149 + 26290236-26290880 27 3.9
02_03_0194 - 16215032-16215177,16215322-16215393,16215518-162155... 27 3.9
06_02_0233 + 13315579-13316046 27 5.1
12_02_1164 + 26620779-26621087 26 6.7
08_02_0663 + 19797646-19798117,19798168-19798190 26 6.7
08_01_0585 + 5187545-5187961 26 6.7
06_02_0167 + 12529281-12529597,12530358-12530475 26 6.7
04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684 26 6.7
01_06_1529 - 38016208-38017296 26 6.7
07_03_1005 + 23249040-23249228,23250453-23250574,23250654-232508... 26 8.9
06_02_0127 + 12140843-12140966,12141170-12141567 26 8.9
05_02_0011 - 5570990-5571389,5572378-5572560,5572568-5572818 26 8.9
04_04_0278 - 24106072-24106254,24106854-24106898,24106985-241070... 26 8.9
>05_04_0303 - 20010761-20011756
Length = 331
Score = 29.1 bits (62), Expect = 0.95
Identities = 19/47 (40%), Positives = 20/47 (42%)
Frame = +3
Query: 81 IKNGVVYRDSRGLAIGQAYNSDGGVSQANANVIGGVSQAYGSSSNGG 221
+ GVV D G G GGV N GG S A GSS GG
Sbjct: 52 VGGGVVGGDGVGGGGGGGGGGGGGVGAGEMN--GGASSAAGSSGGGG 96
>04_03_0138 +
11710595-11711271,11711533-11711665,11711819-11711926,
11712307-11712354,11713191-11713250
Length = 341
Score = 29.1 bits (62), Expect = 0.95
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = +3
Query: 171 NVIGGVSQAYGSSSNGGHLAR 233
+V+GG++ +G+ +GGHLAR
Sbjct: 102 DVVGGLTSQWGTQLHGGHLAR 122
>07_03_0116 +
13584689-13584725,13585167-13585234,13586091-13586195,
13587498-13587659,13587771-13587824,13587929-13588078,
13588881-13589090
Length = 261
Score = 27.9 bits (59), Expect = 2.2
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3
Query: 216 GGHLARDGL-FYPGQAIAKAETYDNDGNLI 302
GG + +G PGQA+A A TYD + + I
Sbjct: 157 GGFVPAEGAELTPGQAVAPASTYDGEDHYI 186
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +3
Query: 129 QAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPGQAIAKAETYDNDGNLI 302
QA+ +DG + + + G S N G+ + +F + + E NDGN I
Sbjct: 314 QAFQNDGNLFKEQSVQNNGNSMEVQICENNGNSCEEQIFQNNRNYFQGEASQNDGNSI 371
>08_02_1098 - 24291138-24291851,24292607-24292861
Length = 322
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 66 RANPVIKNGVVYRDSRGLAIGQAYNSDGGVSQANANVIGG 185
R NP I G++ + A +YN GG++ N+ G
Sbjct: 202 RINPNIYRGLINKTPPPAACAYSYNRTGGIAGKKCNIPNG 241
>06_03_0961 + 26331266-26332151,26332244-26332393,26332761-26333281
Length = 518
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 114 GLAIGQAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPGQAIAKAETYDNDG 293
G + G N+ G +S AN+ G S AYG+S +G + D G A N G
Sbjct: 302 GSSSGSNSNA-GSMSGANSGA-GSSSSAYGASGSGSNSMSDSGSSSGSVSASGSGSSNSG 359
>06_02_0169 - 12535102-12536062,12536949-12537646
Length = 552
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 172 LALAWLTPPSLLYAWPMAKPRLSRYT 95
+ +A P +L Y W M+ P +RYT
Sbjct: 210 ILMAGAVPAALTYYWRMSMPETARYT 235
>06_02_0166 + 12522172-12522890,12523567-12524596
Length = 582
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 172 LALAWLTPPSLLYAWPMAKPRLSRYT 95
+ +A P +L Y W M+ P +RYT
Sbjct: 217 ILMAGAVPAALTYYWRMSMPETARYT 242
>03_06_0656 -
35330109-35331011,35331154-35331360,35331455-35331632,
35331726-35332221,35332889-35333033
Length = 642
Score = 27.1 bits (57), Expect = 3.9
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 129 QAYNS-DGGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPGQ-AIAKAETYDNDG 293
+A NS +GG Q GG Q G S NG + G Y G + Y N+G
Sbjct: 461 RAVNSGNGGYRQGGYRGDGGYQQGRGYSGNGNGGYQQGQGYSGNGGYQQGRGYSNNG 517
>02_05_0149 + 26290236-26290880
Length = 214
Score = 27.1 bits (57), Expect = 3.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +3
Query: 126 GQAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPGQAIAKAETYDNDGN 296
G YN + G A GG YG G + ++ G F G K + D GN
Sbjct: 159 GGGYNGEPGGGGGGAGEGGGYGGDYGGGDVGANWSKRGSFRGGG--GKTQQKDGGGN 213
>02_03_0194 -
16215032-16215177,16215322-16215393,16215518-16215593,
16215984-16216074,16216188-16216258,16216344-16216506,
16218841-16219065,16219206-16219507,16219551-16219680,
16219783-16220045
Length = 512
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 138 NSDGGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPGQA 260
+ DG + ANA+V G G +LA DG+ GQ+
Sbjct: 217 SGDGQTTPANASVSFGCGAKLGGDLGSSNLALDGILGFGQS 257
>06_02_0233 + 13315579-13316046
Length = 155
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +2
Query: 107 QSGFSHRPSIQQRRRSEPGQRQ-RNRWCITGL 199
+S + RP+ ++RRR P R+ R+RW GL
Sbjct: 87 RSRWQRRPARRERRRWRPAWRERRSRWREVGL 118
>12_02_1164 + 26620779-26621087
Length = 102
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = +3
Query: 105 DSRGLAIG--QAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLAR 233
D G +G + + DGGV+ GG + +G GG +AR
Sbjct: 28 DQGGDVVGRHEEVHGDGGVAGCGEEEQGGDAAGHGEEEQGGGVAR 72
>08_02_0663 + 19797646-19798117,19798168-19798190
Length = 164
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 314 DAPXD*VSIVVVGFRFRDSLTGIEEP 237
DAP V++ V G F DS +G EP
Sbjct: 22 DAPASSVALAVAGALFPDSPSGFREP 47
>08_01_0585 + 5187545-5187961
Length = 138
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 131 SIQQRRRSEPGQRQRNRWCITGLR 202
+I++RRR P +R R C+ G R
Sbjct: 91 AIEERRRPRPAAAERRRPCVAGGR 114
>06_02_0167 + 12529281-12529597,12530358-12530475
Length = 144
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 172 LALAWLTPPSLLYAWPMAKPRLSRYT 95
+ +A P +L Y W M P +RYT
Sbjct: 83 ILMAGAVPAALTYYWRMPMPETARYT 108
>04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684
Length = 402
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 147 GGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPG-QAIAKAETYDNDGNLI 302
GG S A ++GG + A G++ GG ++ PG A E D +++
Sbjct: 83 GGASAAGVGLLGGGALAAGAAVPGGAVSAASAAVPGVDATGGEEVAGGDASVL 135
>01_06_1529 - 38016208-38017296
Length = 362
Score = 26.2 bits (55), Expect = 6.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 60 LCRANPVIKNGVVYRDSRGLAIGQAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLAR-D 236
L R P+I +GV+Y++ RG GG + + A G +GG +A D
Sbjct: 41 LRRRLPLITSGVLYQEGRG-------GGGGGGGEGRRRQAYTYACASGGGDHGGGVAEAD 93
Query: 237 GLFYPG 254
F+PG
Sbjct: 94 MGFFPG 99
>07_03_1005 +
23249040-23249228,23250453-23250574,23250654-23250800,
23250932-23250998,23251763-23251836,23252010-23252102,
23253433-23253550,23254340-23254402,23254774-23254806,
23255325-23255399
Length = 326
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +2
Query: 11 NRRDGSKICSRCGACGLVP 67
+RRD ++CS+ GA G P
Sbjct: 57 SRRDAVRVCSQAGAAGPAP 75
>06_02_0127 + 12140843-12140966,12141170-12141567
Length = 173
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/56 (26%), Positives = 18/56 (32%)
Frame = +3
Query: 126 GQAYNSDGGVSQANANVIGGVSQAYGSSSNGGHLARDGLFYPGQAIAKAETYDNDG 293
G Y GG GG ++ YG GG+ G Y G Y G
Sbjct: 113 GGGYGGYGGYGGYGGGGYGGYNKGYGGGGGGGYSKGFGGGYGGGGYPGGGYYGGGG 168
>05_02_0011 - 5570990-5571389,5572378-5572560,5572568-5572818
Length = 277
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 204 SSSNGGHLARDGLFYPGQAIAKAETYDNDGN 296
++ +GGH RD +AIA AE+ GN
Sbjct: 89 TTCSGGHYRRDSAVVIDEAIAYAESLQLSGN 119
>04_04_0278 -
24106072-24106254,24106854-24106898,24106985-24107068,
24107191-24107389,24108281-24108432
Length = 220
Score = 25.8 bits (54), Expect = 8.9
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = -2
Query: 41 DYKSCCHHVCSQ 6
D+K+C HH CS+
Sbjct: 106 DWKNCAHHACSE 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,496,177
Number of Sequences: 37544
Number of extensions: 192442
Number of successful extensions: 667
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 665
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -