Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5498
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical pr...    27   2.7  
U42991-1|AAA85197.1|  118|Caenorhabditis elegans RNA binding pro...    27   2.7  
U24124-1|AAA77029.1|  118|Caenorhabditis elegans RRM-type RNA bi...    27   2.7  
AF038614-8|AAB92055.1|  118|Caenorhabditis elegans Hypothetical ...    27   2.7  
U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like ...    26   6.1  
U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like ...    26   6.1  
AF097737-1|AAD16170.1|  982|Caenorhabditis elegans hunchback-rel...    26   6.1  
AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical ...    26   8.1  

>Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical
          protein C27C12.6 protein.
          Length = 260

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 74 VGTAQGHKRHSDYKSCCHHVCS 9
          V   +GHKRH  YK C    C+
Sbjct: 31 VSWLKGHKRHCKYKECACEKCN 52


>U42991-1|AAA85197.1|  118|Caenorhabditis elegans RNA binding
           protein protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 150 GVSQANANVIGGVSQAYGSS--SNGGHLARDGLFYPGQ 257
           G ++ANAN+ GG  + YG +   N G   + G +Y  Q
Sbjct: 31  GPARANANLNGGFQRGYGGNGYGNRGGYGQQGGYYGQQ 68


>U24124-1|AAA77029.1|  118|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 150 GVSQANANVIGGVSQAYGSS--SNGGHLARDGLFYPGQ 257
           G ++ANAN+ GG  + YG +   N G   + G +Y  Q
Sbjct: 31  GPARANANLNGGFQRGYGGNGYGNRGGYGQQGGYYGQQ 68


>AF038614-8|AAB92055.1|  118|Caenorhabditis elegans Hypothetical
           protein F15E6.3 protein.
          Length = 118

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 150 GVSQANANVIGGVSQAYGSS--SNGGHLARDGLFYPGQ 257
           G ++ANAN+ GG  + YG +   N G   + G +Y  Q
Sbjct: 31  GPARANANLNGGFQRGYGGNGYGNRGGYGQQGGYYGQQ 68


>U40939-3|ABD63235.1|  960|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform b protein.
          Length = 960

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 196 ACDTPPITLALAWLTPPSLLYAWPMAKPRLSRYTTPFLM 80
           AC TP  T + ++  PP L    P+A P      TP L+
Sbjct: 280 ACSTPTTTTSASFCRPPGL---GPVALPPTQNGQTPMLV 315


>U40939-2|AAA81701.3|  982|Caenorhabditis elegans Hunchback like
           (fly gap gene related)protein 1, isoform a protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 196 ACDTPPITLALAWLTPPSLLYAWPMAKPRLSRYTTPFLM 80
           AC TP  T + ++  PP L    P+A P      TP L+
Sbjct: 302 ACSTPTTTTSASFCRPPGL---GPVALPPTQNGQTPMLV 337


>AF097737-1|AAD16170.1|  982|Caenorhabditis elegans
           hunchback-related protein protein.
          Length = 982

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 196 ACDTPPITLALAWLTPPSLLYAWPMAKPRLSRYTTPFLM 80
           AC TP  T + ++  PP L    P+A P      TP L+
Sbjct: 302 ACSTPTTTTSASFCRPPGL---GPVALPPTQNGQTPMLV 337


>AF039048-6|AAB94235.1|   91|Caenorhabditis elegans Hypothetical
           protein F16B4.4 protein.
          Length = 91

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +3

Query: 99  YRDSRGLAIGQAYNSDGGVSQANANVIGGVSQAYGSSSNGG 221
           Y +  G   G  +  DGG  Q      GG  Q  G +  GG
Sbjct: 42  YNNQGGFDGGSQFGGDGGFQQGGGFQQGGQFQQGGFNQGGG 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,439,247
Number of Sequences: 27780
Number of extensions: 136886
Number of successful extensions: 402
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)