Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5498
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   5.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              20   9.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +3

Query: 84  KNGVVYRDSRGLAIGQAYNSDGGVSQANAN 173
           + G  Y   RG  I    N D  V + N+N
Sbjct: 22  EGGRSYGKGRGFIIQNNNNDDWSVGKKNSN 51


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 35 CSRCGACG 58
          C  CGACG
Sbjct: 75 CPICGACG 82


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 114 GLAIGQAYNSDGGVSQANANV 176
           GL + ++  SDG  S  N+NV
Sbjct: 219 GLPMWKSDTSDGPESHQNSNV 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,307
Number of Sequences: 438
Number of extensions: 1583
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)