Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5493
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0827 + 32260313-32260525,32261862-32262716 50 1e-06
08_02_0786 + 21198247-21198921 47 2e-05
07_01_0496 - 3730822-3731280 46 3e-05
07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818 44 9e-05
09_04_0363 + 16957949-16958361,16958524-16958527 42 3e-04
01_06_0508 - 29897536-29897982 42 3e-04
09_04_0568 + 18591757-18592251 40 0.002
08_02_1177 + 24946763-24947275 40 0.002
06_03_0745 + 24109406-24109921 40 0.002
02_04_0078 + 19507705-19508169 40 0.002
02_01_0715 - 5346036-5346557 40 0.002
03_06_0270 - 32768979-32769488 39 0.003
03_06_0269 - 32761354-32761857,32762094-32762190,32762387-327624... 38 0.006
07_01_0492 - 3708379-3708864 36 0.030
04_04_0639 + 26883810-26883821,26884131-26884307,26885276-268853... 29 2.6
06_03_0616 + 22772629-22773051 29 3.5
01_06_1213 - 35466954-35467592 29 3.5
12_02_0474 + 19482150-19482152,19482205-19482336,19482513-194826... 28 8.0
04_04_0383 - 24851496-24851681,24851785-24851882,24851964-248520... 28 8.0
>01_06_0827 + 32260313-32260525,32261862-32262716
Length = 355
Score = 50.4 bits (115), Expect = 1e-06
Identities = 22/52 (42%), Positives = 30/52 (57%)
Frame = +1
Query: 466 ERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPATTPSGCVCS 621
++ S LC SGCGFYGNP+T +CSVC+++ AT PS V +
Sbjct: 195 QQASAGQPVLCASGCGFYGNPATLDMCSVCYRQHCLLNGATMATGPSSSVAA 246
>08_02_0786 + 21198247-21198921
Length = 224
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 490 ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPATTPSGCVCSLRSVRTHARLSAAAPT 669
ALC SGCGF+G+ T+ +CS C+++ LK +++ S S + + APT
Sbjct: 79 ALCSSGCGFFGSKETNNMCSKCYRDHLKATSPLFSSSSSPATASTTDITVPIAPATTAPT 138
Score = 44.0 bits (99), Expect = 1e-04
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 490 ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPATTP 603
++C +GCGF+G+ +T LCS C+++ LK P P
Sbjct: 19 SMCANGCGFFGSEATKKLCSKCYRDQLKAAPSSPPAAP 56
>07_01_0496 - 3730822-3731280
Length = 152
Score = 46.0 bits (104), Expect = 3e-05
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 463 MERESNPMEALCRSGCGFYGNPSTDGLCSVCFKE 564
M+ + A+C +GCGF+G+ +TDGLCS C+K+
Sbjct: 7 MQARNGGGAAMCAAGCGFFGSAATDGLCSKCYKQ 40
>07_01_0493 - 3715677-3715907,3716675-3716861,3717631-3717818
Length = 201
Score = 44.4 bits (100), Expect = 9e-05
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 490 ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPATTP 603
A+C +GCGF+G+ +T GLCS C+KE + + ++ P
Sbjct: 15 AMCAAGCGFFGSAATGGLCSKCYKEQQPQPRHHISSAP 52
>09_04_0363 + 16957949-16958361,16958524-16958527
Length = 138
Score = 42.3 bits (95), Expect = 3e-04
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 490 ALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPATTPSGCVCSLRSVRTHARLSAAAPT 669
ALC S CGF+ + T +CS C+++ LK AT+P+ S ++ +A APT
Sbjct: 61 ALCASSCGFFSSKETKNMCSKCYRDHLK------ATSPATATASTPNIIVPMTPAATAPT 114
Score = 41.1 bits (92), Expect = 8e-04
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +1
Query: 493 LCRSGCGFYGNPSTDGLCSVCFKEALKK 576
+C +GCGF+G+ +T LCS C+++ LK+
Sbjct: 1 MCTNGCGFFGSEATKNLCSKCYRDQLKE 28
>01_06_0508 - 29897536-29897982
Length = 148
Score = 42.3 bits (95), Expect = 3e-04
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +1
Query: 466 ERESNPMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPA 594
ER+ C +GCGF+G+ T GLCS C+++ + + P+
Sbjct: 6 ERQDERPPLPCANGCGFFGSADTRGLCSKCYRQTVMSQASAPS 48
>09_04_0568 + 18591757-18592251
Length = 164
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/67 (34%), Positives = 29/67 (43%)
Frame = +1
Query: 481 PMEALCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPPATTPSGCVCSLRSVRTHARLSAA 660
P LC + CGF GNP+T LC CF A P ++ S V + R A L
Sbjct: 17 PEITLCANSCGFPGNPATQNLCQNCFLAATASTSSP--SSLSSPVLDKQPPRPAAPLVEP 74
Query: 661 APTVPQP 681
+P P
Sbjct: 75 QAPLPPP 81
>08_02_1177 + 24946763-24947275
Length = 170
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +1
Query: 481 PMEALCRSGCGFYGNPSTDGLCSVCFKEA-LKKKQQPPATTPS 606
P LC + CGF GNP+T+ LC CF A A +PS
Sbjct: 17 PEMTLCANSCGFPGNPATNNLCQNCFLAASASSSSSSAAASPS 59
>06_03_0745 + 24109406-24109921
Length = 171
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 493 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 585
LC + CGF+G+ +T +CS C KE + K++Q
Sbjct: 16 LCINNCGFFGSAATMNMCSKCHKEMIMKQEQ 46
>02_04_0078 + 19507705-19508169
Length = 154
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +1
Query: 493 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQPP---ATTPSGCVCSLRSVRTHARLSAAA 663
LC + CGF+G+P+T LCS C+++ ++ P A S C + S + + A
Sbjct: 14 LCANNCGFFGSPATLDLCSKCYRDRQGRESTAPVVVAAAASACPATHPSSPSSSSCPAFL 73
Query: 664 PT 669
P+
Sbjct: 74 PS 75
>02_01_0715 - 5346036-5346557
Length = 173
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 493 LCRSGCGFYGNPSTDGLCSVCFKEALKKKQQ 585
LC + CGF+G+ +T +CS C KE + K++Q
Sbjct: 16 LCINNCGFFGSAATMNMCSKCHKEMIMKEEQ 46
>03_06_0270 - 32768979-32769488
Length = 169
Score = 39.1 bits (87), Expect = 0.003
Identities = 12/25 (48%), Positives = 21/25 (84%)
Frame = +1
Query: 490 ALCRSGCGFYGNPSTDGLCSVCFKE 564
A+C +GCGF+G+ +T+ +CS C++E
Sbjct: 22 AMCVTGCGFFGSEATNNMCSRCYRE 46
>03_06_0269 -
32761354-32761857,32762094-32762190,32762387-32762421,
32763035-32763040
Length = 213
Score = 38.3 bits (85), Expect = 0.006
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +1
Query: 493 LCRSGCGFYGNPSTDGLCSVCFKEALKKK 579
LC + CGF+G+ T+ +CS C+++ +K K
Sbjct: 76 LCVNNCGFFGSRMTENMCSKCYRDTVKAK 104
>07_01_0492 - 3708379-3708864
Length = 161
Score = 35.9 bits (79), Expect = 0.030
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +1
Query: 493 LCRSGCGFYGNPSTDGLCSVCFKEALK 573
LC + CGF+G+ T+ +CS C+++ +K
Sbjct: 22 LCVNNCGFFGSSMTNNMCSKCYRDFVK 48
>04_04_0639 +
26883810-26883821,26884131-26884307,26885276-26885339,
26886614-26887734,26888193-26888481,26888528-26888658,
26888910-26889133,26889220-26889286,26889744-26889803,
26889896-26889979,26890290-26890301
Length = 746
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/66 (31%), Positives = 25/66 (37%)
Frame = -2
Query: 685 GQAGARWARRPTTGRGCGRYEGSRHSPTASSREAXXXXXXXXXXXXXXVRLWRDCRRNRS 506
G A AR ARRP G G P SR A +R+ RD +RN S
Sbjct: 272 GLAHARQARRPAPASGAGAIGKVFQGPELWSRMAADPTTRPYLDQPDFMRMLRDVQRNPS 331
Query: 505 PIGKAL 488
+ L
Sbjct: 332 SLNNYL 337
>06_03_0616 + 22772629-22773051
Length = 140
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Frame = -2
Query: 679 AGARWARRP----TTGRGCGRYEGSRHSPTASSR 590
+G W RRP RG GR+ G R PT S R
Sbjct: 21 SGGAWRRRPWGQAMLARGYGRWLGGRVDPTTSGR 54
>01_06_1213 - 35466954-35467592
Length = 212
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +1
Query: 502 SGCGFYGNPSTDGLCSVCFKEA 567
SGC FYG PS G C ++A
Sbjct: 82 SGCAFYGQPSPPGPCPCPLRQA 103
>12_02_0474 +
19482150-19482152,19482205-19482336,19482513-19482602,
19482649-19482708,19482959-19483058,19483137-19483234,
19483351-19483525,19484167-19484270
Length = 253
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 446 HFNNKFQTLH*CLTSDCTKSTL 381
HF+ + TLH C TSDC K L
Sbjct: 165 HFSRPWFTLHPCGTSDCMKLLL 186
>04_04_0383 -
24851496-24851681,24851785-24851882,24851964-24852063,
24852741-24852899
Length = 180
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 446 HFNNKFQTLH*CLTSDCTKSTL 381
HF+ + TLH C TSDC K L
Sbjct: 123 HFSRPWFTLHPCGTSDCMKLLL 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,802,899
Number of Sequences: 37544
Number of extensions: 337326
Number of successful extensions: 959
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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