Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5492
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53333-10|AAA96163.1|  140|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z82260-8|CAB05136.1|  361|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z82260-7|CAB05135.1|  369|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>U53333-10|AAA96163.1|  140|Caenorhabditis elegans Hypothetical
           protein F36A4.2 protein.
          Length = 140

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -1

Query: 332 LPNKWLFENCRLLSSLVLIRMTLTNTFLNVKRKIKFLFELPTLTVSTINYLHFSK*FILC 153
           LP   L   C L S  VL +  +T           ++ E   L    + +  F    +  
Sbjct: 3   LPTICLVILCSLASGQVLFQAKVTCNIGTYWCGELYILEEDWLFHDQLAHDKFCTSDMYK 62

Query: 152 QLDITLHP--FVTLSISRKYFFNHNCT 78
           QLD T++P  F T+     Y FNHNCT
Sbjct: 63  QLDYTVNPKDFPTMDYEIFYKFNHNCT 89


>Z82260-8|CAB05136.1|  361|Caenorhabditis elegans Hypothetical
           protein C32H11.10 protein.
          Length = 361

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 106 ENIFLTTTALGGF--SGYKRQLPLKKNQ*FRFY 14
           EN    TT +     S YK+QLPLK N   +FY
Sbjct: 305 ENRISNTTCVAKLTSSNYKKQLPLKVNGNMKFY 337


>Z82260-7|CAB05135.1|  369|Caenorhabditis elegans Hypothetical
           protein C32H11.9 protein.
          Length = 369

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 106 ENIFLTTTALGGF--SGYKRQLPLKKNQ*FRFY 14
           EN    TT +     S YK+QLPLK N   +FY
Sbjct: 313 ENRISNTTCVAKLTSSNYKKQLPLKVNGNMKFY 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,389,884
Number of Sequences: 27780
Number of extensions: 255124
Number of successful extensions: 515
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)