Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5492
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.4  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 367 KKRSYENATREPSTSLENLEIER*KYDLNFLWFMADNVNNNPPI 498
           K  SY + T+  S  +E+L       DL F+W M D +  NP I
Sbjct: 135 KFESYPHDTQICSMMIESLSHTT--QDLVFIWNMTDPLVVNPEI 176


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 552  LQILSLIIYNFYSIIAMSYRRV 487
            LQI++L  Y  YS++  ++ +V
Sbjct: 1042 LQIMNLKTYTQYSVVVQAFNKV 1063


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 586 KYVKYYGKTCSFTNIKPYNL 527
           K VK+ GK   FT++ PY L
Sbjct: 226 KGVKWTGKVVYFTSLFPYAL 245


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 586 KYVKYYGKTCSFTNIKPYNL 527
           K VK+ GK   FT++ PY L
Sbjct: 279 KGVKWTGKVVYFTSLFPYAL 298


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 229 FIFLLTFKNVFVKVIRISTRLERSLQFS 312
           F+F    + V VKV+ + ++LE  LQ S
Sbjct: 272 FVFAALGEFVVVKVLDLRSQLEYDLQTS 299


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 70  THPVQLWLKKYFLEIL 117
           TH +  W+K+ F+ IL
Sbjct: 338 THKMAPWVKRVFIHIL 353


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +1

Query: 70  THPVQLWLKKYFLEIL 117
           TH +  W+K+ F+ IL
Sbjct: 338 THKMAPWVKRVFIHIL 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,967
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)