Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5490
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical ...    30   1.7  
AF040642-1|AAN73871.2|  272|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical p...    28   5.3  
U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine rec...    28   5.3  
Z81576-4|CAB04642.1|  309|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AL132865-4|CAB60604.1|  458|Caenorhabditis elegans Hypothetical
           protein Y62E10A.6 protein.
          Length = 458

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -3

Query: 333 TTASTKISRRNTNHRYMYVDEKNIFYGLNAIRYLVHKIPKKKITDCNPLITAAILNIN 160
           T +  K+ R+      + V    I  GL    ++ H+IP+K I D N  +   I+  N
Sbjct: 253 TESLPKLERKKKRLTEVLVKNIGIANGLRQCHFIFHRIPEKIIADSNGKVQEIIVKNN 310


>AF040642-1|AAN73871.2|  272|Caenorhabditis elegans Hypothetical
           protein C50D2.6 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 187 NHRGHFEYQCKQNGVVMEIAKPLTK 113
           N R HFE  CK+ G ++E  +P+T+
Sbjct: 159 NLRSHFEMLCKKLGSMIECVEPVTR 183


>Z82055-10|CAB04848.2|  659|Caenorhabditis elegans Hypothetical
           protein T26H2.7 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 565 VHITVEKYILELCFFLKSALTSLYCIAFFITNI 663
           +H T EK+ L+LC    SA   +  I+FFI N+
Sbjct: 327 IHETYEKWYLQLC----SASIGILTISFFIANV 355


>U39999-10|AAA81108.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein95 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = +2

Query: 146 AILFALIFKMAAVINGLQSVIFFFGILCTRYLIAFSP*KIF---FSSTYIYLWL---VFL 307
           AIL ALI  +   +N   +  F FGI        FS  K F    + + ++ WL   VF 
Sbjct: 20  AILLALISLVGGAVNAYIASGFMFGIKFRGGFFIFSISKAFSNILTCSLVFFWLVPAVFA 79

Query: 308 REIFVDAVVN 337
           R+  V   VN
Sbjct: 80  RDNLVSNYVN 89


>Z81576-4|CAB04642.1|  309|Caenorhabditis elegans Hypothetical
           protein R10E8.5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 137 HHDAILFALIFKMAAVINGLQSVIFFFGILCTRYL 241
           H DAI F  +  M  ++    + + +FGI C +Y+
Sbjct: 172 HPDAISFLCVAVMFLILGSSFASVIYFGIKCYQYI 206


>Z93397-3|CAB07720.2|  376|Caenorhabditis elegans Hypothetical
           protein ZC482.6 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +1

Query: 196 TVSNFFF-WNLMYKISDC 246
           T+ N F  WN++YK+ DC
Sbjct: 96  TICNLFMEWNIVYKVEDC 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,824
Number of Sequences: 27780
Number of extensions: 326471
Number of successful extensions: 891
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)