Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5490
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.2  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 610 KKNIILIYIFQLLYARYMQGTYKSAE 533
           KK+   ++IF + + +YM GT  S E
Sbjct: 368 KKDRQELWIFTISFQKYMSGTLNSNE 393


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 17  PEMINQQFQKNKTIAKNALSAKSKTN 94
           P++  +QFQKN T  + + S  S  N
Sbjct: 342 PKLARKQFQKNTTGLERSRSWSSLDN 367


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 530 NQYKYKVNISQKKNLYK 480
           N YKY  N   KK  YK
Sbjct: 327 NNYKYNYNNYNKKLYYK 343


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,183
Number of Sequences: 438
Number of extensions: 3898
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)