Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5488
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81137-9|CAB03466.1|  182|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -2

Query: 664 RSHDRSSVLKMAKNERKSVSAIITSDSGPA*QNHRN 557
           RS+DRS V   +KN+ +SV+    S S P  +NHRN
Sbjct: 357 RSYDRSPVRASSKNQERSVNC---SPSSPR-KNHRN 388


>Z81137-9|CAB03466.1|  182|Caenorhabditis elegans Hypothetical
           protein W02D9.10 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 585 AVQHNKITGIRFPLEKNSNKLKS 517
           AV HN I+G+R  L +NS+ L S
Sbjct: 36  AVAHNSISGLRGSLRRNSSNLSS 58


>U97007-7|AAB52292.1|  441|Caenorhabditis elegans Hypothetical
           protein ZC196.3 protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 451 ISHYIELTSFELGYFTITTSVHAFKFV*ILFQWESNSGDFVMLD 582
           ++ Y+E TSF+ G   I+   +       L  W   S +F M+D
Sbjct: 48  LNTYLEKTSFDKGTLEISLCKNFIPLFDYLSSWNPESSEFEMID 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,056
Number of Sequences: 27780
Number of extensions: 285798
Number of successful extensions: 602
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)