Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-5487
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 68 1e-12
SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual 52 7e-08
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 39 5e-04
SPAC694.03 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.3
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 27 2.3
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 27 3.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 3.1
SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces... 27 3.1
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 26 4.1
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 26 4.1
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc... 26 5.4
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 7.2
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|... 25 7.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 9.5
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 25 9.5
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 67.7 bits (158), Expect = 1e-12
Identities = 44/145 (30%), Positives = 74/145 (51%)
Frame = +2
Query: 170 KESATALAKKIRNKELKSEDLVRAVVERIKEVNPIINAIAADRYEAALTEAREVDRLVAV 349
K ATALA+ I+++++ S +LV A +R ++N + YE AL A E+D A
Sbjct: 57 KYDATALAEMIKDRKVTSVELVTAFCKRAAIAQQLVNCVNELFYEEALARAAELDEYYAK 116
Query: 350 GLSEQEWQKKPFLGVPFTTKESQAIKGMPLTMGLWSRRKEVASEDSEAIIRLKNAGAIPI 529
S P GVP + KE +IK T ++ +A +DS+ + ++ AGA+
Sbjct: 117 TGS----LVGPLHGVPVSVKEHISIKNHTATASFLAKANIIAEKDSDLVATVRKAGAVFY 172
Query: 530 GSSNLPELLVWQETRNLVYGMTKNP 604
+ P+ ++ ET + + G+T NP
Sbjct: 173 CRTPQPQAIMHLETSSNLTGVTVNP 197
>SPAC869.01 |||amidase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 52.0 bits (119), Expect = 7e-08
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 3/144 (2%)
Frame = +2
Query: 164 ILKESATA--LAKKIRNKELKSEDLVRAVVERIKEVNPIINAIAADRYEAALTEAREVDR 337
I E AT L + N L S D+V ++R +VNP +N I + LT A E+D
Sbjct: 64 ITLEDATIDQLQNYMENGILTSTDIVHCYLDRYLQVNPYVNGILQLNPD-VLTIASELDD 122
Query: 338 LVAVGLSEQEWQKKPFLGVPFTTKESQAIKG-MPLTMGLWSRRKEVASEDSEAIIRLKNA 514
A G+ + P G+PF K++ A K M T G ++ + D+ + +L+ A
Sbjct: 123 ERANGII-----RGPLHGIPFIVKDNFATKDKMDTTAGSYALLGSIVPRDAYVVKQLREA 177
Query: 515 GAIPIGSSNLPELLVWQETRNLVY 586
GA+ G + L E W + R+ Y
Sbjct: 178 GAVLFGHATLSE---WADMRSNDY 198
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 39.1 bits (87), Expect = 5e-04
Identities = 36/158 (22%), Positives = 70/158 (44%)
Frame = +2
Query: 155 KHAILKESATALAKKIRNKELKSEDLVRAVVERIKEVNPIINAIAADRYEAALTEAREVD 334
++AI S LA I S ++ +A R + I+N ++ AL +A+E+D
Sbjct: 54 ENAITNLSMLELATNIAKGNYTSYNVTKAFCHRAALAHQILNCCIEIFFDEALKKAKELD 113
Query: 335 RLVAVGLSEQEWQKKPFLGVPFTTKESQAIKGMPLTMGLWSRRKEVASEDSEAIIRLKNA 514
+ + PF G+P + K+ + G ++G S + +E + L++
Sbjct: 114 DV----FQKTSKVVGPFHGIPISLKDQVDLPGKDSSIGYVSLVGKPKTEIALLAKILQDK 169
Query: 515 GAIPIGSSNLPELLVWQETRNLVYGMTKNPHHTGPVSG 628
GAI + +P ++ +T + ++G T N + SG
Sbjct: 170 GAIFYVKTTVPMAMMAPQTVSNLHGYTYNALNINLSSG 207
>SPAC694.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 249
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 98 FSSRCTGTSERNQSQYLES-KHAILKESATALAKKIRNKELK 220
FS GT+ +Q+QYLE K ++L + ++KI+ +LK
Sbjct: 163 FSREVDGTTTDDQAQYLEKIKKSLLPNIPSQWSEKIKLTKLK 204
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 27.1 bits (57), Expect = 2.3
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 290 ADRYEAALTEAREVDRLVAVGLSEQEWQKKPFLGVPFTTKESQAIKGMPLTMGLWSRRKE 469
A+ ++ ALT RE++ + L E+ KPF P T S A K + M + S K+
Sbjct: 19 AEAFQLALTACREIEESLPSILGEKSEVSKPF--KPAVTDPSNAKK--EINMAIESPSKK 74
Query: 470 VAS 478
S
Sbjct: 75 ATS 77
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 288 LQIGMKRLSPKPGKW 332
LQ+G+KR+ K GKW
Sbjct: 619 LQLGLKRMESKAGKW 633
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/63 (23%), Positives = 32/63 (50%)
Frame = +2
Query: 155 KHAILKESATALAKKIRNKELKSEDLVRAVVERIKEVNPIINAIAADRYEAALTEAREVD 334
K A+L+E + + + + +++ V+E ++ N ++ + + EA L +E D
Sbjct: 397 KEALLQELESLRVQLSKKVPMPAKNTDERVIETLQRSNELLRMDISMQNEALLLRKQEND 456
Query: 335 RLV 343
RLV
Sbjct: 457 RLV 459
>SPBC365.01 |||sec14 cytosolic factor family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -1
Query: 418 LTLLSRKWNSKKWFFLPFLFRKSNGDKPIHFPGFGESRFIPI 293
+ L W+ K+F P + K KP G+ +S++IP+
Sbjct: 209 MALFEGVWSIGKYFLDPEVRSKVTFCKPAQVSGYVDSKYIPL 250
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +2
Query: 245 VERIKEVNPIINAIAADRYEAALTEAREVDRLVAVGLSEQEWQKKPF 385
+E K + + N + D Y + + +E+D LVAV + + P+
Sbjct: 187 LENNKFLTHLNNEVLHDNYTRNIEKLKELDNLVAVSFERDDIVEPPY 233
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 104 SRCTGTSERNQSQYLESKHAILKESATALAKKIRNKELKSE 226
S+ S+ SQ+L S H +E +T+ + R E SE
Sbjct: 983 SKDNNVSQERGSQFLRSSHGRSRERSTSARRSRRFSEANSE 1023
>SPAC6G9.04 |mug79||meiotically upregulated gene
Mug79|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = -2
Query: 237 RTRSSDFNSLFLIFLARAVALSFRIACLLSKYWDWFLSLVPVQREEKVDSEIQQQLR 67
+ RS+ LF + + F + C+L +Y+D FL P V +++ Q+R
Sbjct: 894 KNRSTFAKLLFSTWSNLPSDIGFILECMLKEYYDTFLK-SPFAVPNAVQAQLHNQVR 949
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 297 GMKRLSPKPGKWIGLSPLDFLNKNGR 374
G + SP+ G W LSP D L GR
Sbjct: 869 GTQVYSPEKGIWTELSPQDVLQMLGR 894
>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 767
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 140 QYLESKHAILKESATALAKKIRNKELKSEDLVRAVVERIKEV 265
+Y+E K LAK++ N S+D +++ ++KEV
Sbjct: 449 RYVEDKDVFQNFYTKLLAKRLVNGTSNSQDAESSMLSKLKEV 490
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 559 LAGDP*LGVWNDKKPASHRPGLRGGSSGA 645
+A P G PA+ +PGL GGSS +
Sbjct: 330 VAPRPSAGAGGANPPAASQPGLLGGSSNS 358
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 346 GDKPIHFPGFGESRFIPICSNSVDNWIYLFNP 251
G+K P F R +P C+ + ++ YL +P
Sbjct: 183 GEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDP 214
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.0 bits (52), Expect = 9.5
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 521 IPIGSSNLPELLVWQETRNLVYGMTKNPHH 610
I IGSS L +LLVW E ++ Y + + H+
Sbjct: 311 IAIGSSKLGQLLVW-EWQSESYVLKQQSHY 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,794,363
Number of Sequences: 5004
Number of extensions: 58539
Number of successful extensions: 196
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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