Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-5487
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    26   0.27 
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          24   1.1  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    23   1.9  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    23   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    23   2.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.8  

>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 26.2 bits (55), Expect = 0.27
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 67  AKLLLDFAIDFFFSLYW 117
           +++L+DF +DF+F  +W
Sbjct: 51  SEVLMDFTLDFYFRQFW 67


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 25/99 (25%), Positives = 37/99 (37%)
 Frame = +2

Query: 317 EAREVDRLVAVGLSEQEWQKKPFLGVPFTTKESQAIKGMPLTMGLWSRRKEVASEDSEAI 496
           E     R+ +  L ++  +  PFL    T  E   +         WSR +E A   S+A 
Sbjct: 2   EKHLTQRINSCDLLKKRSENDPFLKRLITGDEKWVVYNNIKRKRSWSRPRESAQTTSKAG 61

Query: 497 IRLKNAGAIPIGSSNLPELLVWQETRNLVYGMTKNPHHT 613
           I  K              LLVW + + +VY     P+ T
Sbjct: 62  IHRKKV-----------LLLVWWDHKGIVYFELLPPNRT 89


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +1

Query: 67  AKLLLDFAIDFFFSLYW 117
           +++ +DF +DF+F  +W
Sbjct: 51  SEVKMDFTLDFYFRQFW 67


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -3

Query: 647 SAPLEPPRRPGRC 609
           S P+EPPRR   C
Sbjct: 335 SEPVEPPRRKNNC 347


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = -2

Query: 123 LVPVQREEKVDSEIQQQLRVEYEYF*FFTHVH 28
           LV  +RE++ + ++++++ +EYE +  ++H H
Sbjct: 44  LVQQEREQEYE-KLKRKMILEYELYIKYSHTH 74


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 357 LNKNGRKNHFLEFHLRL 407
           +NK  R N +L FHL L
Sbjct: 252 INKEARSNLYLPFHLTL 268


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 357 LNKNGRKNHFLEFHLRL 407
           +NK  R N +L FHL L
Sbjct: 247 INKEARSNLYLPFHLTL 263


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 18/66 (27%), Positives = 26/66 (39%)
 Frame = +2

Query: 311 LTEAREVDRLVAVGLSEQEWQKKPFLGVPFTTKESQAIKGMPLTMGLWSRRKEVASEDSE 490
           L E     R+ +  L ++  +  PFL    T  E   +         WSR +E A   S+
Sbjct: 121 LKEKHLTQRINSCDLLKKRNENDPFLKRLITGDEKWVVYNNIKRKRSWSRPREPAQTTSK 180

Query: 491 AIIRLK 508
           A I  K
Sbjct: 181 AGIHRK 186


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 182 WHFLSGSHACFLNTGIGFFRL 120
           WHF+       +  G+GF R+
Sbjct: 297 WHFVVDRQLELVQLGVGFMRI 317


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 106 SLYWDKRKKPIPVFRKQACDP 168
           S+ W++  + +P+ RKQ   P
Sbjct: 521 SIVWERDTRVLPINRKQKVFP 541


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,543
Number of Sequences: 438
Number of extensions: 4135
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)